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Practical, reusable scripts for bioinformatics
Perl Python R Shell
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biology
blast
enzyme
file_formats
for_education
not_used
plot
protein
sequence
taxon
util
.gitignore
LICENSE
README.md

README.md

Bio_scripts

Practical, reusable scripts for bioinformatics .

sequence        tools for FASTA/Q files: fasta2tab, tab2fasta,
                fasta_extract_by_pattern, fasta_common_seqs,
                fasta_locate_motif, fasta_remove_duplicates,
                fastx_translate, fasta_gc_skew.plot ...
util            moved to https://github.com/shenwei356/datakit
plot            plot scripts: heatmap ...

blast           NCBI BLAST+ wrappers
file_formats    genbank->gtf, bam2gff, gff2fa ...
enzyme          analysis of restrict enzymes
protein         Batch compute pI of protein

biology         get insert from sanger sequencing result

for_education   scripts with detail comments, for education
not_used        older version of some scripts

See README in sub derectories.


Copyright (c) 2014-2015, Wei Shen (shenwei356@gmail.com)

MIT License

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