Practical, reusable scripts for bioinformatics
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biology add util/csv_merge Apr 1, 2015
blast apply python Isort to all python scripts Sep 30, 2015
enzyme add taxon/taxon_fetch.py Feb 6, 2016
file_formats fix gff_intersect.py Sep 1, 2017
for_education add taxon/taxon_fetch.py Feb 6, 2016
not_used improve tools in util/ Oct 4, 2015
plot update plot_distribution.py Apr 26, 2016
protein
sequence add sequence/fastx_tm.py May 9, 2017
taxon update doc of taxon_fetch.py Feb 6, 2016
util move util to https://github.com/shenwei356/datakit Nov 14, 2015
.gitignore add taxon/taxon_fetch.py Feb 6, 2016
LICENSE add taxon/taxon_fetch.py Feb 6, 2016
README.md add taxon/taxon_fetch.py Feb 6, 2016

README.md

Bio_scripts

Practical, reusable scripts for bioinformatics .

sequence        tools for FASTA/Q files: fasta2tab, tab2fasta,
                fasta_extract_by_pattern, fasta_common_seqs,
                fasta_locate_motif, fasta_remove_duplicates,
                fastx_translate, fasta_gc_skew.plot ...
util            moved to https://github.com/shenwei356/datakit
plot            plot scripts: heatmap ...

blast           NCBI BLAST+ wrappers
file_formats    genbank->gtf, bam2gff, gff2fa ...
enzyme          analysis of restrict enzymes
protein         Batch compute pI of protein

biology         get insert from sanger sequencing result

for_education   scripts with detail comments, for education
not_used        older version of some scripts

See README in sub derectories.


Copyright (c) 2014-2015, Wei Shen (shenwei356@gmail.com)

MIT License