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nucl_est.accession2taxid.gz unavailable #12
I am planning to test out this package as it seems super useful. However, while running
Any insights on how to solve this?
Hi @swuyts! I think that it's solved! Please try and commend us.
If it fails again, please try the following (for Linux and macOS):
Now go to R and do build the database
Does it work for you?
Sorry for the late reply swuyts. Somehow I don't seem to get emails for issue openings.
In any case, the problem is from NCBI merging nucl_est and nucl_gs into nucl_gb. After the merge those files are no longer present but with default values the
You could fix this with something like:
but the github version of the package has been updated to fix the defaults and so can be used as normal:
I also pushed the changes to CRAN so if everything goes correctly you should shortly be able to update your package with an