not working with fresh install

[pedres]

Hi,

Some months ago I prepared some scripts to batch processing bracken files. When I got that files and run the scripts it did not work. Then I did a fresh install of taxonomizr (taxonomizr_0.10.6) on R 4.4.2 and run:
prepareDatabase("accesions.sql",getAccessions=FALSE)
taxa<-data.table::fread("VCM78.txt")
taxonomy<-getTaxonomy(unique(taxa$taxonomy_id)

And the error is:
VCM78.txt

Error: no such table: nodes
Aviso:
In file.remove(tmp) :
no fue posible abrir el archivo 'C:\Users\FULESK~1\AppData\Local\Temp\RtmpiE4iKt\file2f4c28e836cb', motivo 'Permission denied'

I also tried run R as administrator but it also fails. In folder Documents there are three files accession.sql (543Mb), nodes.dmp (189) and names.dmp(246)

Thank you very much for your help
Manuel

[sherrillmix]

It seems likely that prepareDatabase was not successfully completed. I would delete accession.sql (and perhaps nodes.dmp and names.dmp) and rerun prepareDatabase.