From 1ffd20d48ace8d068c4888338371dab668b2c1f4 Mon Sep 17 00:00:00 2001
From: Jon Harmon <jonthegeek@gmail.com>
Date: Mon, 13 Nov 2023 13:45:37 -0600
Subject: [PATCH] Update workflows. (#76)

---
 .github/workflows/R-CMD-check.yaml   |  4 ++--
 .github/workflows/pkgdown.yaml       |  4 +++-
 .github/workflows/pr-commands.yaml   | 12 ++++++------
 .github/workflows/test-coverage.yaml | 23 +++++++++++++++++++++--
 4 files changed, 32 insertions(+), 11 deletions(-)

diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml
index eb3b6c5..74d8c97 100644
--- a/.github/workflows/R-CMD-check.yaml
+++ b/.github/workflows/R-CMD-check.yaml
@@ -18,14 +18,14 @@ jobs:
       fail-fast: false
       matrix:
         config:
-          - {os: macOS-latest,   r: 'release'}
+          - {os: macos-latest,   r: 'release'}
           - {os: windows-latest, r: 'release'}
           - {os: ubuntu-latest,   r: 'devel', http-user-agent: 'release'}
           - {os: ubuntu-latest,   r: 'release'}
           - {os: ubuntu-latest,   r: 'oldrel-1'}
 
     env:
-      GITHUB_PAT: ${{ secrets.GH_PAT }}
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
       R_KEEP_PKG_SOURCE: yes
 
     steps:
diff --git a/.github/workflows/pkgdown.yaml b/.github/workflows/pkgdown.yaml
index 8b01cec..580a30c 100644
--- a/.github/workflows/pkgdown.yaml
+++ b/.github/workflows/pkgdown.yaml
@@ -19,6 +19,8 @@ jobs:
       group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }}
     env:
       GITHUB_PAT: ${{ secrets.GH_PAT }}
+    permissions:
+      contents: write
     steps:
       - uses: actions/checkout@v4
 
@@ -39,7 +41,7 @@ jobs:
 
       - name: Deploy to GitHub pages 🚀
         if: github.event_name != 'pull_request'
-        uses: JamesIves/github-pages-deploy-action@4.1.4
+        uses: JamesIves/github-pages-deploy-action@v4.4.1
         with:
           clean: false
           branch: gh-pages
diff --git a/.github/workflows/pr-commands.yaml b/.github/workflows/pr-commands.yaml
index 6ce7654..eea58c5 100644
--- a/.github/workflows/pr-commands.yaml
+++ b/.github/workflows/pr-commands.yaml
@@ -12,13 +12,13 @@ jobs:
     name: document
     runs-on: ubuntu-latest
     env:
-      GITHUB_PAT: ${{ secrets.GH_PAT }}
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
     steps:
       - uses: actions/checkout@v4
 
       - uses: r-lib/actions/pr-fetch@v2
         with:
-          repo-token: ${{ secrets.GH_PAT }}
+          repo-token: ${{ secrets.GITHUB_TOKEN }}
 
       - uses: r-lib/actions/setup-r@v2
         with:
@@ -42,20 +42,20 @@ jobs:
 
       - uses: r-lib/actions/pr-push@v2
         with:
-          repo-token: ${{ secrets.GH_PAT }}
+          repo-token: ${{ secrets.GITHUB_TOKEN }}
 
   style:
     if: ${{ github.event.issue.pull_request && (github.event.comment.author_association == 'MEMBER' || github.event.comment.author_association == 'OWNER') && startsWith(github.event.comment.body, '/style') }}
     name: style
     runs-on: ubuntu-latest
     env:
-      GITHUB_PAT: ${{ secrets.GH_PAT }}
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
     steps:
       - uses: actions/checkout@v4
 
       - uses: r-lib/actions/pr-fetch@v2
         with:
-          repo-token: ${{ secrets.GH_PAT }}
+          repo-token: ${{ secrets.GITHUB_TOKEN }}
 
       - uses: r-lib/actions/setup-r@v2
 
@@ -76,4 +76,4 @@ jobs:
 
       - uses: r-lib/actions/pr-push@v2
         with:
-          repo-token: ${{ secrets.GH_PAT }}
+          repo-token: ${{ secrets.GITHUB_TOKEN }}
diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml
index cb1717f..d3f65be 100644
--- a/.github/workflows/test-coverage.yaml
+++ b/.github/workflows/test-coverage.yaml
@@ -12,7 +12,7 @@ jobs:
   test-coverage:
     runs-on: ubuntu-latest
     env:
-      GITHUB_PAT: ${{ secrets.GH_PAT }}
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
 
     steps:
       - uses: actions/checkout@v4
@@ -27,5 +27,24 @@ jobs:
           needs: coverage
 
       - name: Test coverage
-        run: covr::codecov(quiet = FALSE)
+        run: |
+          covr::codecov(
+            quiet = FALSE,
+            clean = FALSE,
+            install_path = file.path(Sys.getenv("RUNNER_TEMP"), "package")
+          )
         shell: Rscript {0}
+
+      - name: Show testthat output
+        if: always()
+        run: |
+          ## --------------------------------------------------------------------
+          find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true
+        shell: bash
+
+      - name: Upload test results
+        if: failure()
+        uses: actions/upload-artifact@v3
+        with:
+          name: coverage-test-failures
+          path: ${{ runner.temp }}/package