bug fix in handling of a trimmed file

shka · Nov 30, 2016 · 1bc8211 · 1bc8211
1 parent a84dc9b
commit 1bc8211
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/lib/bio/gadget/fq1l.rb b/lib/bio/gadget/fq1l.rb
@@ -135,7 +135,7 @@ def trim_3end(sequence)
           end
         ensure
           File.unlink(fifo) if File.exist?(fifo)
-          File.unlink(tmpfile) if File.exist?(tmpfile)
+          File.unlink(tmpfile) if File.exist?(tmpfile) && !options.key?(:trimmed)
         end
       end