restructured examples for cmake-based autogen

shogun-toolbox · Jan 1, 2014 · c7322ce · c7322ce
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diff --git a/...umented/cmdline_static/CMakeLists.txt.old → examples/cmdline_static/CMakeLists.txt.old b/...umented/cmdline_static/CMakeLists.txt.old → examples/cmdline_static/CMakeLists.txt.old
diff --git a/...ples/undocumented/cmdline_static/check.sh → examples/cmdline_static/check.sh b/...ples/undocumented/cmdline_static/check.sh → examples/cmdline_static/check.sh
diff --git a/...nted/cmdline_static/classifier_gmnpsvm.sg → ...ples/cmdline_static/classifier_gmnpsvm.sg b/...nted/cmdline_static/classifier_gmnpsvm.sg → ...ples/cmdline_static/classifier_gmnpsvm.sg
diff --git a/...nted/cmdline_static/classifier_gpbtsvm.sg → ...ples/cmdline_static/classifier_gpbtsvm.sg b/...nted/cmdline_static/classifier_gpbtsvm.sg → ...ples/cmdline_static/classifier_gpbtsvm.sg
diff --git a/...cumented/cmdline_static/classifier_knn.sg → examples/cmdline_static/classifier_knn.sg b/...cumented/cmdline_static/classifier_knn.sg → examples/cmdline_static/classifier_knn.sg
diff --git a/...cumented/cmdline_static/classifier_lda.sg → examples/cmdline_static/classifier_lda.sg b/...cumented/cmdline_static/classifier_lda.sg → examples/cmdline_static/classifier_lda.sg
diff --git a/...ed/cmdline_static/classifier_liblinear.sg → ...es/cmdline_static/classifier_liblinear.sg b/...ed/cmdline_static/classifier_liblinear.sg → ...es/cmdline_static/classifier_liblinear.sg
diff --git a/...ented/cmdline_static/classifier_libsvm.sg → examples/cmdline_static/classifier_libsvm.sg b/...ented/cmdline_static/classifier_libsvm.sg → examples/cmdline_static/classifier_libsvm.sg
diff --git a/...ine_static/classifier_libsvmmulticlass.sg → ...ine_static/classifier_libsvmmulticlass.sg b/...ine_static/classifier_libsvmmulticlass.sg → ...ine_static/classifier_libsvmmulticlass.sg
diff --git a/...dline_static/classifier_libsvmoneclass.sg → ...dline_static/classifier_libsvmoneclass.sg b/...dline_static/classifier_libsvmoneclass.sg → ...dline_static/classifier_libsvmoneclass.sg
diff --git a/...ented/cmdline_static/classifier_mpdsvm.sg → examples/cmdline_static/classifier_mpdsvm.sg b/...ented/cmdline_static/classifier_mpdsvm.sg → examples/cmdline_static/classifier_mpdsvm.sg
diff --git a/...d/cmdline_static/classifier_perceptron.sg → ...s/cmdline_static/classifier_perceptron.sg b/...d/cmdline_static/classifier_perceptron.sg → ...s/cmdline_static/classifier_perceptron.sg
diff --git a/...ted/cmdline_static/classifier_svmlight.sg → ...les/cmdline_static/classifier_svmlight.sg b/...ted/cmdline_static/classifier_svmlight.sg → ...les/cmdline_static/classifier_svmlight.sg
diff --git a/...ented/cmdline_static/classifier_svmlin.sg → examples/cmdline_static/classifier_svmlin.sg b/...ented/cmdline_static/classifier_svmlin.sg → examples/cmdline_static/classifier_svmlin.sg
diff --git a/...nted/cmdline_static/classifier_svmocas.sg → ...ples/cmdline_static/classifier_svmocas.sg b/...nted/cmdline_static/classifier_svmocas.sg → ...ples/cmdline_static/classifier_svmocas.sg
diff --git a/...ented/cmdline_static/classifier_svmsgd.sg → examples/cmdline_static/classifier_svmsgd.sg b/...ented/cmdline_static/classifier_svmsgd.sg → examples/cmdline_static/classifier_svmsgd.sg
diff --git a/...cmdline_static/clustering_hierarchical.sg → ...cmdline_static/clustering_hierarchical.sg b/...cmdline_static/clustering_hierarchical.sg → ...cmdline_static/clustering_hierarchical.sg
diff --git a/...ented/cmdline_static/clustering_kmeans.sg → examples/cmdline_static/clustering_kmeans.sg b/...ented/cmdline_static/clustering_kmeans.sg → examples/cmdline_static/clustering_kmeans.sg
diff --git a/...ted/cmdline_static/distance_braycurtis.sg → ...les/cmdline_static/distance_braycurtis.sg b/...ted/cmdline_static/distance_braycurtis.sg → ...les/cmdline_static/distance_braycurtis.sg
diff --git a/...ented/cmdline_static/distance_canberra.sg → examples/cmdline_static/distance_canberra.sg b/...ented/cmdline_static/distance_canberra.sg → examples/cmdline_static/distance_canberra.sg
diff --git a/...d/cmdline_static/distance_canberraword.sg → ...s/cmdline_static/distance_canberraword.sg b/...d/cmdline_static/distance_canberraword.sg → ...s/cmdline_static/distance_canberraword.sg
diff --git a/...nted/cmdline_static/distance_chebyshew.sg → ...ples/cmdline_static/distance_chebyshew.sg b/...nted/cmdline_static/distance_chebyshew.sg → ...ples/cmdline_static/distance_chebyshew.sg
diff --git a/...nted/cmdline_static/distance_chisquare.sg → ...ples/cmdline_static/distance_chisquare.sg b/...nted/cmdline_static/distance_chisquare.sg → ...ples/cmdline_static/distance_chisquare.sg
diff --git a/...umented/cmdline_static/distance_cosine.sg → examples/cmdline_static/distance_cosine.sg b/...umented/cmdline_static/distance_cosine.sg → examples/cmdline_static/distance_cosine.sg
diff --git a/...nted/cmdline_static/distance_euclidean.sg → ...ples/cmdline_static/distance_euclidean.sg b/...nted/cmdline_static/distance_euclidean.sg → ...ples/cmdline_static/distance_euclidean.sg
diff --git a/...ented/cmdline_static/distance_geodesic.sg → examples/cmdline_static/distance_geodesic.sg b/...ented/cmdline_static/distance_geodesic.sg → examples/cmdline_static/distance_geodesic.sg
diff --git a/...ed/cmdline_static/distance_hammingword.sg → ...es/cmdline_static/distance_hammingword.sg b/...ed/cmdline_static/distance_hammingword.sg → ...es/cmdline_static/distance_hammingword.sg
diff --git a/...umented/cmdline_static/distance_jensen.sg → examples/cmdline_static/distance_jensen.sg b/...umented/cmdline_static/distance_jensen.sg → examples/cmdline_static/distance_jensen.sg
diff --git a/...nted/cmdline_static/distance_manhatten.sg → ...ples/cmdline_static/distance_manhatten.sg b/...nted/cmdline_static/distance_manhatten.sg → ...ples/cmdline_static/distance_manhatten.sg
diff --git a/.../cmdline_static/distance_manhattenword.sg → .../cmdline_static/distance_manhattenword.sg b/.../cmdline_static/distance_manhattenword.sg → .../cmdline_static/distance_manhattenword.sg
diff --git a/...nted/cmdline_static/distance_minkowski.sg → ...ples/cmdline_static/distance_minkowski.sg b/...nted/cmdline_static/distance_minkowski.sg → ...ples/cmdline_static/distance_minkowski.sg
diff --git a/...ented/cmdline_static/distance_tanimoto.sg → examples/cmdline_static/distance_tanimoto.sg b/...ented/cmdline_static/distance_tanimoto.sg → examples/cmdline_static/distance_tanimoto.sg
diff --git a/.../cmdline_static/distribution_histogram.sg → .../cmdline_static/distribution_histogram.sg b/.../cmdline_static/distribution_histogram.sg → .../cmdline_static/distribution_histogram.sg
diff --git a/...mented/cmdline_static/distribution_hmm.sg → examples/cmdline_static/distribution_hmm.sg b/...mented/cmdline_static/distribution_hmm.sg → examples/cmdline_static/distribution_hmm.sg
diff --git a/.../cmdline_static/distribution_linearhmm.sg → .../cmdline_static/distribution_linearhmm.sg b/.../cmdline_static/distribution_linearhmm.sg → .../cmdline_static/distribution_linearhmm.sg
diff --git a/...ndocumented/cmdline_static/kernel_chi2.sg → examples/cmdline_static/kernel_chi2.sg b/...ndocumented/cmdline_static/kernel_chi2.sg → examples/cmdline_static/kernel_chi2.sg
diff --git a/...umented/cmdline_static/kernel_combined.sg → examples/cmdline_static/kernel_combined.sg b/...umented/cmdline_static/kernel_combined.sg → examples/cmdline_static/kernel_combined.sg
diff --git a/.../cmdline_static/kernel_commulongstring.sg → .../cmdline_static/kernel_commulongstring.sg b/.../cmdline_static/kernel_commulongstring.sg → .../cmdline_static/kernel_commulongstring.sg
diff --git a/...d/cmdline_static/kernel_commwordstring.sg → ...s/cmdline_static/kernel_commwordstring.sg b/...d/cmdline_static/kernel_commwordstring.sg → ...s/cmdline_static/kernel_commwordstring.sg
diff --git a/...documented/cmdline_static/kernel_const.sg → examples/cmdline_static/kernel_const.sg b/...documented/cmdline_static/kernel_const.sg → examples/cmdline_static/kernel_const.sg
diff --git a/...ndocumented/cmdline_static/kernel_diag.sg → examples/cmdline_static/kernel_diag.sg b/...ndocumented/cmdline_static/kernel_diag.sg → examples/cmdline_static/kernel_diag.sg
diff --git a/...umented/cmdline_static/kernel_distance.sg → examples/cmdline_static/kernel_distance.sg b/...umented/cmdline_static/kernel_distance.sg → examples/cmdline_static/kernel_distance.sg
diff --git a/...mdline_static/kernel_fixeddegreestring.sg → ...mdline_static/kernel_fixeddegreestring.sg b/...mdline_static/kernel_fixeddegreestring.sg → ...mdline_static/kernel_fixeddegreestring.sg
diff --git a/...umented/cmdline_static/kernel_gaussian.sg → examples/cmdline_static/kernel_gaussian.sg b/...umented/cmdline_static/kernel_gaussian.sg → examples/cmdline_static/kernel_gaussian.sg
diff --git a/...ed/cmdline_static/kernel_gaussianshift.sg → ...es/cmdline_static/kernel_gaussianshift.sg b/...ed/cmdline_static/kernel_gaussianshift.sg → ...es/cmdline_static/kernel_gaussianshift.sg
diff --git a/...ocumented/cmdline_static/kernel_linear.sg → examples/cmdline_static/kernel_linear.sg b/...ocumented/cmdline_static/kernel_linear.sg → examples/cmdline_static/kernel_linear.sg
diff --git a/...ented/cmdline_static/kernel_linearbyte.sg → examples/cmdline_static/kernel_linearbyte.sg b/...ented/cmdline_static/kernel_linearbyte.sg → examples/cmdline_static/kernel_linearbyte.sg
diff --git a/...ted/cmdline_static/kernel_linearstring.sg → ...les/cmdline_static/kernel_linearstring.sg b/...ted/cmdline_static/kernel_linearstring.sg → ...les/cmdline_static/kernel_linearstring.sg
diff --git a/...ented/cmdline_static/kernel_linearword.sg → examples/cmdline_static/kernel_linearword.sg b/...ented/cmdline_static/kernel_linearword.sg → examples/cmdline_static/kernel_linearword.sg
diff --git a/...ine_static/kernel_localalignmentstring.sg → ...ine_static/kernel_localalignmentstring.sg b/...ine_static/kernel_localalignmentstring.sg → ...ine_static/kernel_localalignmentstring.sg
diff --git a/...e_static/kernel_localityimprovedstring.sg → ...e_static/kernel_localityimprovedstring.sg b/...e_static/kernel_localityimprovedstring.sg → ...e_static/kernel_localityimprovedstring.sg
diff --git a/...nted/cmdline_static/kernel_oligostring.sg → ...ples/cmdline_static/kernel_oligostring.sg b/...nted/cmdline_static/kernel_oligostring.sg → ...ples/cmdline_static/kernel_oligostring.sg
diff --git a/...ndocumented/cmdline_static/kernel_poly.sg → examples/cmdline_static/kernel_poly.sg b/...ndocumented/cmdline_static/kernel_poly.sg → examples/cmdline_static/kernel_poly.sg
diff --git a/.../cmdline_static/kernel_polymatchstring.sg → .../cmdline_static/kernel_polymatchstring.sg b/.../cmdline_static/kernel_polymatchstring.sg → .../cmdline_static/kernel_polymatchstring.sg
diff --git a/...ed/cmdline_static/kernel_polymatchword.sg → ...es/cmdline_static/kernel_polymatchword.sg b/...ed/cmdline_static/kernel_polymatchword.sg → ...es/cmdline_static/kernel_polymatchword.sg
diff --git a/...cumented/cmdline_static/kernel_sigmoid.sg → examples/cmdline_static/kernel_sigmoid.sg b/...cumented/cmdline_static/kernel_sigmoid.sg → examples/cmdline_static/kernel_sigmoid.sg
diff --git a/...ic/kernel_simplelocalityimprovedstring.sg → ...ic/kernel_simplelocalityimprovedstring.sg b/...ic/kernel_simplelocalityimprovedstring.sg → ...ic/kernel_simplelocalityimprovedstring.sg
diff --git a/...d/cmdline_static/kernel_sparsegaussian.sg → ...s/cmdline_static/kernel_sparsegaussian.sg b/...d/cmdline_static/kernel_sparsegaussian.sg → ...s/cmdline_static/kernel_sparsegaussian.sg
diff --git a/...ted/cmdline_static/kernel_sparselinear.sg → ...les/cmdline_static/kernel_sparselinear.sg b/...ted/cmdline_static/kernel_sparselinear.sg → ...les/cmdline_static/kernel_sparselinear.sg
diff --git a/...ented/cmdline_static/kernel_sparsepoly.sg → examples/cmdline_static/kernel_sparsepoly.sg b/...ented/cmdline_static/kernel_sparsepoly.sg → examples/cmdline_static/kernel_sparsepoly.sg
diff --git a/...undocumented/cmdline_static/kernel_top.sg → examples/cmdline_static/kernel_top.sg b/...undocumented/cmdline_static/kernel_top.sg → examples/cmdline_static/kernel_top.sg
diff --git a/...e_static/kernel_weightedcommwordstring.sg → ...e_static/kernel_weightedcommwordstring.sg b/...e_static/kernel_weightedcommwordstring.sg → ...e_static/kernel_weightedcommwordstring.sg
diff --git a/...ic/kernel_weighteddegreepositionstring.sg → ...ic/kernel_weighteddegreepositionstring.sg b/...ic/kernel_weighteddegreepositionstring.sg → ...ic/kernel_weighteddegreepositionstring.sg
diff --git a/...ine_static/kernel_weighteddegreestring.sg → ...ine_static/kernel_weighteddegreestring.sg b/...ine_static/kernel_weighteddegreestring.sg → ...ine_static/kernel_weighteddegreestring.sg
diff --git a/...cumented/cmdline_static/mkl_multiclass.sg → examples/cmdline_static/mkl_multiclass.sg b/...cumented/cmdline_static/mkl_multiclass.sg → examples/cmdline_static/mkl_multiclass.sg
diff --git a/...nted/cmdline_static/preproc_logplusone.sg → ...ples/cmdline_static/preproc_logplusone.sg b/...nted/cmdline_static/preproc_logplusone.sg → ...ples/cmdline_static/preproc_logplusone.sg
diff --git a/...umented/cmdline_static/preproc_normone.sg → examples/cmdline_static/preproc_normone.sg b/...umented/cmdline_static/preproc_normone.sg → examples/cmdline_static/preproc_normone.sg
diff --git a/...cmdline_static/preproc_prunevarsubmean.sg → ...cmdline_static/preproc_prunevarsubmean.sg b/...cmdline_static/preproc_prunevarsubmean.sg → ...cmdline_static/preproc_prunevarsubmean.sg
diff --git a/...cmdline_static/preproc_sortulongstring.sg → ...cmdline_static/preproc_sortulongstring.sg b/...cmdline_static/preproc_sortulongstring.sg → ...cmdline_static/preproc_sortulongstring.sg
diff --git a/.../cmdline_static/preproc_sortwordstring.sg → .../cmdline_static/preproc_sortwordstring.sg b/.../cmdline_static/preproc_sortwordstring.sg → .../cmdline_static/preproc_sortwordstring.sg
diff --git a/...cumented/cmdline_static/regression_krr.sg → examples/cmdline_static/regression_krr.sg b/...cumented/cmdline_static/regression_krr.sg → examples/cmdline_static/regression_krr.sg
diff --git a/...ented/cmdline_static/regression_libsvr.sg → examples/cmdline_static/regression_libsvr.sg b/...ented/cmdline_static/regression_libsvr.sg → examples/cmdline_static/regression_libsvr.sg
diff --git a/...ted/cmdline_static/regression_svrlight.sg → ...les/cmdline_static/regression_svrlight.sg b/...ted/cmdline_static/regression_svrlight.sg → ...les/cmdline_static/regression_svrlight.sg
diff --git a/...umented/csharp_modular/CMakeLists.txt.old → examples/csharp_modular/CMakeLists.txt.old b/...umented/csharp_modular/CMakeLists.txt.old → examples/csharp_modular/CMakeLists.txt.old
diff --git a/examples/undocumented/csharp_modular/Load.cs → examples/csharp_modular/Load.cs b/examples/undocumented/csharp_modular/Load.cs → examples/csharp_modular/Load.cs
diff --git a/...undocumented/csharp_modular/MatrixTest.cs → examples/csharp_modular/MatrixTest.cs b/...undocumented/csharp_modular/MatrixTest.cs → examples/csharp_modular/MatrixTest.cs
diff --git a/...undocumented/csharp_modular/VectorTest.cs → examples/csharp_modular/VectorTest.cs b/...undocumented/csharp_modular/VectorTest.cs → examples/csharp_modular/VectorTest.cs
diff --git a/...ples/undocumented/csharp_modular/check.sh → examples/csharp_modular/check.sh b/...ples/undocumented/csharp_modular/check.sh → examples/csharp_modular/check.sh
diff --git a/...classifier_averaged_perceptron_modular.cs → ...classifier_averaged_perceptron_modular.cs b/...classifier_averaged_perceptron_modular.cs → ...classifier_averaged_perceptron_modular.cs
diff --git a/.../classifier_gaussiannaivebayes_modular.cs → .../classifier_gaussiannaivebayes_modular.cs b/.../classifier_gaussiannaivebayes_modular.cs → .../classifier_gaussiannaivebayes_modular.cs
diff --git a/...arp_modular/classifier_gmnpsvm_modular.cs → ...arp_modular/classifier_gmnpsvm_modular.cs b/...arp_modular/classifier_gmnpsvm_modular.cs → ...arp_modular/classifier_gmnpsvm_modular.cs
diff --git a/...arp_modular/classifier_gpbtsvm_modular.cs → ...arp_modular/classifier_gpbtsvm_modular.cs b/...arp_modular/classifier_gpbtsvm_modular.cs → ...arp_modular/classifier_gpbtsvm_modular.cs
diff --git a/.../csharp_modular/classifier_knn_modular.cs → .../csharp_modular/classifier_knn_modular.cs b/.../csharp_modular/classifier_knn_modular.cs → .../csharp_modular/classifier_knn_modular.cs
diff --git a/...harp_modular/classifier_larank_modular.cs → ...harp_modular/classifier_larank_modular.cs b/...harp_modular/classifier_larank_modular.cs → ...harp_modular/classifier_larank_modular.cs
diff --git a/.../csharp_modular/classifier_lda_modular.cs → .../csharp_modular/classifier_lda_modular.cs b/.../csharp_modular/classifier_lda_modular.cs → .../csharp_modular/classifier_lda_modular.cs
diff --git a/...p_modular/classifier_liblinear_modular.cs → ...p_modular/classifier_liblinear_modular.cs b/...p_modular/classifier_liblinear_modular.cs → ...p_modular/classifier_liblinear_modular.cs
diff --git a/...ular/classifier_libsvm_minimal_modular.cs → ...ular/classifier_libsvm_minimal_modular.cs b/...ular/classifier_libsvm_minimal_modular.cs → ...ular/classifier_libsvm_minimal_modular.cs
diff --git a/...harp_modular/classifier_libsvm_modular.cs → ...harp_modular/classifier_libsvm_modular.cs b/...harp_modular/classifier_libsvm_modular.cs → ...harp_modular/classifier_libsvm_modular.cs
diff --git a/...ular/classifier_libsvmoneclass_modular.cs → ...ular/classifier_libsvmoneclass_modular.cs b/...ular/classifier_libsvmoneclass_modular.cs → ...ular/classifier_libsvmoneclass_modular.cs
diff --git a/...harp_modular/classifier_mpdsvm_modular.cs → ...harp_modular/classifier_mpdsvm_modular.cs b/...harp_modular/classifier_mpdsvm_modular.cs → ...harp_modular/classifier_mpdsvm_modular.cs
diff --git a/...ar/classifier_multiclasslibsvm_modular.cs → ...ar/classifier_multiclasslibsvm_modular.cs b/...ar/classifier_multiclasslibsvm_modular.cs → ...ar/classifier_multiclasslibsvm_modular.cs
diff --git a/..._modular/classifier_perceptron_modular.cs → ..._modular/classifier_perceptron_modular.cs b/..._modular/classifier_perceptron_modular.cs → ..._modular/classifier_perceptron_modular.cs
diff --git a/...odular/clustering_hierarchical_modular.cs → ...odular/clustering_hierarchical_modular.cs b/...odular/clustering_hierarchical_modular.cs → ...odular/clustering_hierarchical_modular.cs
diff --git a/...harp_modular/clustering_kmeans_modular.cs → ...harp_modular/clustering_kmeans_modular.cs b/...harp_modular/clustering_kmeans_modular.cs → ...harp_modular/clustering_kmeans_modular.cs
diff --git a/...sharp_modular/converter_isomap_modular.cs → ...sharp_modular/converter_isomap_modular.cs b/...sharp_modular/converter_isomap_modular.cs → ...sharp_modular/converter_isomap_modular.cs
diff --git a/...nverter_locallylinearembedding_modular.cs → ...nverter_locallylinearembedding_modular.cs b/...nverter_locallylinearembedding_modular.cs → ...nverter_locallylinearembedding_modular.cs
diff --git a/...verter_multidimensionalscaling_modular.cs → ...verter_multidimensionalscaling_modular.cs b/...verter_multidimensionalscaling_modular.cs → ...verter_multidimensionalscaling_modular.cs
diff --git a/...rp_modular/distance_braycurtis_modular.cs → ...rp_modular/distance_braycurtis_modular.cs b/...rp_modular/distance_braycurtis_modular.cs → ...rp_modular/distance_braycurtis_modular.cs
diff --git a/...harp_modular/distance_canberra_modular.cs → ...harp_modular/distance_canberra_modular.cs b/...harp_modular/distance_canberra_modular.cs → ...harp_modular/distance_canberra_modular.cs
diff --git a/...arp_modular/distance_chebyshew_modular.cs → ...arp_modular/distance_chebyshew_modular.cs b/...arp_modular/distance_chebyshew_modular.cs → ...arp_modular/distance_chebyshew_modular.cs
diff --git a/...arp_modular/distance_chisquare_modular.cs → ...arp_modular/distance_chisquare_modular.cs b/...arp_modular/distance_chisquare_modular.cs → ...arp_modular/distance_chisquare_modular.cs
diff --git a/...csharp_modular/distance_cosine_modular.cs → ...csharp_modular/distance_cosine_modular.cs b/...csharp_modular/distance_cosine_modular.cs → ...csharp_modular/distance_cosine_modular.cs
diff --git a/...arp_modular/distance_euclidian_modular.cs → ...arp_modular/distance_euclidian_modular.cs b/...arp_modular/distance_euclidian_modular.cs → ...arp_modular/distance_euclidian_modular.cs
diff --git a/...harp_modular/distance_geodesic_modular.cs → ...harp_modular/distance_geodesic_modular.cs b/...harp_modular/distance_geodesic_modular.cs → ...harp_modular/distance_geodesic_modular.cs
diff --git a/...p_modular/distance_hammingword_modular.cs → ...p_modular/distance_hammingword_modular.cs b/...p_modular/distance_hammingword_modular.cs → ...p_modular/distance_hammingword_modular.cs
diff --git a/...csharp_modular/distance_jensen_modular.cs → ...csharp_modular/distance_jensen_modular.cs b/...csharp_modular/distance_jensen_modular.cs → ...csharp_modular/distance_jensen_modular.cs
diff --git a/...modular/distance_manhattenword_modular.cs → ...modular/distance_manhattenword_modular.cs b/...modular/distance_manhattenword_modular.cs → ...modular/distance_manhattenword_modular.cs
diff --git a/...arp_modular/distance_minkowski_modular.cs → ...arp_modular/distance_minkowski_modular.cs b/...arp_modular/distance_minkowski_modular.cs → ...arp_modular/distance_minkowski_modular.cs
diff --git a/...p_modular/distance_normsquared_modular.cs → ...p_modular/distance_normsquared_modular.cs b/...p_modular/distance_normsquared_modular.cs → ...p_modular/distance_normsquared_modular.cs
diff --git a/...harp_modular/distance_tanimoto_modular.cs → ...harp_modular/distance_tanimoto_modular.cs b/...harp_modular/distance_tanimoto_modular.cs → ...harp_modular/distance_tanimoto_modular.cs
diff --git a/...modular/distribution_histogram_modular.cs → ...modular/distribution_histogram_modular.cs b/...modular/distribution_histogram_modular.cs → ...modular/distribution_histogram_modular.cs
diff --git a/...sharp_modular/distribution_hmm_modular.cs → ...sharp_modular/distribution_hmm_modular.cs b/...sharp_modular/distribution_hmm_modular.cs → ...sharp_modular/distribution_hmm_modular.cs
diff --git a/...modular/distribution_linearhmm_modular.cs → ...modular/distribution_linearhmm_modular.cs b/...modular/distribution_linearhmm_modular.cs → ...modular/distribution_linearhmm_modular.cs
diff --git a/...ion_contingencytableevaluation_modular.cs → ...ion_contingencytableevaluation_modular.cs b/...ion_contingencytableevaluation_modular.cs → ...ion_contingencytableevaluation_modular.cs
diff --git a/...rp_modular/features_dense_real_modular.cs → ...rp_modular/features_dense_real_modular.cs b/...rp_modular/features_dense_real_modular.cs → ...rp_modular/features_dense_real_modular.cs
diff --git a/...ed/csharp_modular/features_snp_modular.cs → ...es/csharp_modular/features_snp_modular.cs b/...ed/csharp_modular/features_snp_modular.cs → ...es/csharp_modular/features_snp_modular.cs
diff --git a/...p_modular/features_string_char_modular.cs → ...p_modular/features_string_char_modular.cs b/...p_modular/features_string_char_modular.cs → ...p_modular/features_string_char_modular.cs
diff --git a/...ular/features_string_hashed_wd_modular.cs → ...ular/features_string_hashed_wd_modular.cs b/...ular/features_string_hashed_wd_modular.cs → ...ular/features_string_hashed_wd_modular.cs
diff --git a/...features_string_sliding_window_modular.cs → ...features_string_sliding_window_modular.cs b/...features_string_sliding_window_modular.cs → ...features_string_sliding_window_modular.cs
diff --git a/...ed/csharp_modular/kernel_anova_modular.cs → ...es/csharp_modular/kernel_anova_modular.cs b/...ed/csharp_modular/kernel_anova_modular.cs → ...es/csharp_modular/kernel_anova_modular.cs
diff --git a/...nted/csharp_modular/kernel_auc_modular.cs → ...ples/csharp_modular/kernel_auc_modular.cs b/...nted/csharp_modular/kernel_auc_modular.cs → ...ples/csharp_modular/kernel_auc_modular.cs
diff --git a/...d/csharp_modular/kernel_cauchy_modular.cs → ...s/csharp_modular/kernel_cauchy_modular.cs b/...d/csharp_modular/kernel_cauchy_modular.cs → ...s/csharp_modular/kernel_cauchy_modular.cs
diff --git a/...ted/csharp_modular/kernel_chi2_modular.cs → ...les/csharp_modular/kernel_chi2_modular.cs b/...ted/csharp_modular/kernel_chi2_modular.cs → ...les/csharp_modular/kernel_chi2_modular.cs
diff --git a/...csharp_modular/kernel_circular_modular.cs → ...csharp_modular/kernel_circular_modular.cs b/...csharp_modular/kernel_circular_modular.cs → ...csharp_modular/kernel_circular_modular.cs
diff --git a/...csharp_modular/kernel_combined_modular.cs → ...csharp_modular/kernel_combined_modular.cs b/...csharp_modular/kernel_combined_modular.cs → ...csharp_modular/kernel_combined_modular.cs
diff --git a/...dular/kernel_comm_ulong_string_modular.cs → ...dular/kernel_comm_ulong_string_modular.cs b/...dular/kernel_comm_ulong_string_modular.cs → ...dular/kernel_comm_ulong_string_modular.cs
diff --git a/...ed/csharp_modular/kernel_const_modular.cs → ...es/csharp_modular/kernel_const_modular.cs b/...ed/csharp_modular/kernel_const_modular.cs → ...es/csharp_modular/kernel_const_modular.cs
diff --git a/...ted/csharp_modular/kernel_diag_modular.cs → ...les/csharp_modular/kernel_diag_modular.cs b/...ted/csharp_modular/kernel_diag_modular.cs → ...les/csharp_modular/kernel_diag_modular.cs
diff --git a/...csharp_modular/kernel_distance_modular.cs → ...csharp_modular/kernel_distance_modular.cs b/...csharp_modular/kernel_distance_modular.cs → ...csharp_modular/kernel_distance_modular.cs
diff --git a/...lar/kernel_fixed_degree_string_modular.cs → ...lar/kernel_fixed_degree_string_modular.cs b/...lar/kernel_fixed_degree_string_modular.cs → ...lar/kernel_fixed_degree_string_modular.cs
diff --git a/...csharp_modular/kernel_gaussian_modular.cs → ...csharp_modular/kernel_gaussian_modular.cs b/...csharp_modular/kernel_gaussian_modular.cs → ...csharp_modular/kernel_gaussian_modular.cs
diff --git a/...lar/kernel_inversemultiquadric_modular.cs → ...lar/kernel_inversemultiquadric_modular.cs b/...lar/kernel_inversemultiquadric_modular.cs → ...lar/kernel_inversemultiquadric_modular.cs
diff --git a/...ented/csharp_modular/kernel_io_modular.cs → examples/csharp_modular/kernel_io_modular.cs b/...ented/csharp_modular/kernel_io_modular.cs → examples/csharp_modular/kernel_io_modular.cs
diff --git a/...d/csharp_modular/kernel_linear_modular.cs → ...s/csharp_modular/kernel_linear_modular.cs b/...d/csharp_modular/kernel_linear_modular.cs → ...s/csharp_modular/kernel_linear_modular.cs
diff --git a/...arp_modular/kernel_linear_word_modular.cs → ...arp_modular/kernel_linear_word_modular.cs b/...arp_modular/kernel_linear_word_modular.cs → ...arp_modular/kernel_linear_word_modular.cs
diff --git a/.../kernel_local_alignment_string_modular.cs → .../kernel_local_alignment_string_modular.cs b/.../kernel_local_alignment_string_modular.cs → .../kernel_local_alignment_string_modular.cs
diff --git a/...ernel_locality_improved_string_modular.cs → ...ernel_locality_improved_string_modular.cs b/...ernel_locality_improved_string_modular.cs → ...ernel_locality_improved_string_modular.cs
diff --git a/...nted/csharp_modular/kernel_log_modular.cs → ...ples/csharp_modular/kernel_log_modular.cs b/...nted/csharp_modular/kernel_log_modular.cs → ...ples/csharp_modular/kernel_log_modular.cs
diff --git a/...dular/kernel_match_word_string_modular.cs → ...dular/kernel_match_word_string_modular.cs b/...dular/kernel_match_word_string_modular.cs → ...dular/kernel_match_word_string_modular.cs
diff --git a/...rp_modular/kernel_multiquadric_modular.cs → ...rp_modular/kernel_multiquadric_modular.cs b/...rp_modular/kernel_multiquadric_modular.cs → ...rp_modular/kernel_multiquadric_modular.cs
diff --git a/...rp_modular/kernel_oligo_string_modular.cs → ...rp_modular/kernel_oligo_string_modular.cs b/...rp_modular/kernel_oligo_string_modular.cs → ...rp_modular/kernel_oligo_string_modular.cs
diff --git a/...dular/kernel_poly_match_string_modular.cs → ...dular/kernel_poly_match_string_modular.cs b/...dular/kernel_poly_match_string_modular.cs → ...dular/kernel_poly_match_string_modular.cs
diff --git a/.../kernel_poly_match_word_string_modular.cs → .../kernel_poly_match_word_string_modular.cs b/.../kernel_poly_match_word_string_modular.cs → .../kernel_poly_match_word_string_modular.cs
diff --git a/...ted/csharp_modular/kernel_poly_modular.cs → ...les/csharp_modular/kernel_poly_modular.cs b/...ted/csharp_modular/kernel_poly_modular.cs → ...les/csharp_modular/kernel_poly_modular.cs
diff --git a/...ed/csharp_modular/kernel_power_modular.cs → ...es/csharp_modular/kernel_power_modular.cs b/...ed/csharp_modular/kernel_power_modular.cs → ...es/csharp_modular/kernel_power_modular.cs
diff --git a/...dular/kernel_rationalquadratic_modular.cs → ...dular/kernel_rationalquadratic_modular.cs b/...dular/kernel_rationalquadratic_modular.cs → ...dular/kernel_rationalquadratic_modular.cs
diff --git a/...ar/kernel_salzberg_word_string_modular.cs → ...ar/kernel_salzberg_word_string_modular.cs b/...ar/kernel_salzberg_word_string_modular.cs → ...ar/kernel_salzberg_word_string_modular.cs
diff --git a/.../csharp_modular/kernel_sigmoid_modular.cs → .../csharp_modular/kernel_sigmoid_modular.cs b/.../csharp_modular/kernel_sigmoid_modular.cs → .../csharp_modular/kernel_sigmoid_modular.cs
diff --git a/...sharp_modular/kernel_spherical_modular.cs → ...sharp_modular/kernel_spherical_modular.cs b/...sharp_modular/kernel_spherical_modular.cs → ...sharp_modular/kernel_spherical_modular.cs
diff --git a/...d/csharp_modular/kernel_spline_modular.cs → ...s/csharp_modular/kernel_spline_modular.cs b/...d/csharp_modular/kernel_spline_modular.cs → ...s/csharp_modular/kernel_spline_modular.cs
diff --git a/...csharp_modular/kernel_tstudent_modular.cs → ...csharp_modular/kernel_tstudent_modular.cs b/...csharp_modular/kernel_tstudent_modular.cs → ...csharp_modular/kernel_tstudent_modular.cs
diff --git a/...ted/csharp_modular/kernel_wave_modular.cs → ...les/csharp_modular/kernel_wave_modular.cs b/...ted/csharp_modular/kernel_wave_modular.cs → ...les/csharp_modular/kernel_wave_modular.cs
diff --git a/.../csharp_modular/kernel_wavelet_modular.cs → .../csharp_modular/kernel_wavelet_modular.cs b/.../csharp_modular/kernel_wavelet_modular.cs → .../csharp_modular/kernel_wavelet_modular.cs
diff --git a/...rnel_weighted_comm_word_string_modular.cs → ...rnel_weighted_comm_word_string_modular.cs b/...rnel_weighted_comm_word_string_modular.cs → ...rnel_weighted_comm_word_string_modular.cs
diff --git a/.../kernel_weighted_degree_string_modular.cs → .../kernel_weighted_degree_string_modular.cs b/.../kernel_weighted_degree_string_modular.cs → .../kernel_weighted_degree_string_modular.cs
diff --git a/...documented/csharp_modular/minimal_test.cs → examples/csharp_modular/minimal_test.cs b/...documented/csharp_modular/minimal_test.cs → examples/csharp_modular/minimal_test.cs
diff --git a/...ed/csharp_modular/mkl_binclass_modular.cs → ...es/csharp_modular/mkl_binclass_modular.cs b/...ed/csharp_modular/mkl_binclass_modular.cs → ...es/csharp_modular/mkl_binclass_modular.cs
diff --git a/.../csharp_modular/mkl_multiclass_modular.cs → .../csharp_modular/mkl_multiclass_modular.cs b/.../csharp_modular/mkl_multiclass_modular.cs → .../csharp_modular/mkl_multiclass_modular.cs
diff --git a/...modular/preprocessor_kernelpca_modular.cs → ...modular/preprocessor_kernelpca_modular.cs b/...modular/preprocessor_kernelpca_modular.cs → ...modular/preprocessor_kernelpca_modular.cs
diff --git a/...odular/preprocessor_logplusone_modular.cs → ...odular/preprocessor_logplusone_modular.cs b/...odular/preprocessor_logplusone_modular.cs → ...odular/preprocessor_logplusone_modular.cs
diff --git a/...p_modular/preprocessor_normone_modular.cs → ...p_modular/preprocessor_normone_modular.cs b/...p_modular/preprocessor_normone_modular.cs → ...p_modular/preprocessor_normone_modular.cs
diff --git a/...sharp_modular/preprocessor_pca_modular.cs → ...sharp_modular/preprocessor_pca_modular.cs b/...sharp_modular/preprocessor_pca_modular.cs → ...sharp_modular/preprocessor_pca_modular.cs
diff --git a/...r/preprocessor_prubevarsubmean_modular.cs → ...r/preprocessor_prubevarsubmean_modular.cs b/...r/preprocessor_prubevarsubmean_modular.cs → ...r/preprocessor_prubevarsubmean_modular.cs
diff --git a/...ssor_randomfouriergausspreproc_modular.cs → ...ssor_randomfouriergausspreproc_modular.cs b/...ssor_randomfouriergausspreproc_modular.cs → ...ssor_randomfouriergausspreproc_modular.cs
diff --git a/...r/preprocessor_sortulongstring_modular.cs → ...r/preprocessor_sortulongstring_modular.cs b/...r/preprocessor_sortulongstring_modular.cs → ...r/preprocessor_sortulongstring_modular.cs
diff --git a/...ar/preprocessor_sortwordstring_modular.cs → ...ar/preprocessor_sortwordstring_modular.cs b/...ar/preprocessor_sortwordstring_modular.cs → ...ar/preprocessor_sortwordstring_modular.cs
diff --git a/.../csharp_modular/regression_krr_modular.cs → .../csharp_modular/regression_krr_modular.cs b/.../csharp_modular/regression_krr_modular.cs → .../csharp_modular/regression_krr_modular.cs
diff --git a/...harp_modular/regression_libsvr_modular.cs → ...harp_modular/regression_libsvr_modular.cs b/...harp_modular/regression_libsvr_modular.cs → ...harp_modular/regression_libsvr_modular.cs
diff --git a/...rp_modular/regression_svrlight_modular.cs → ...rp_modular/regression_svrlight_modular.cs b/...rp_modular/regression_svrlight_modular.cs → ...rp_modular/regression_svrlight_modular.cs
diff --git a/examples/data b/examples/data
@@ -0,0 +1 @@
+../data/toy/
diff --git a/...s/regression_gaussian_process_modular.txt → ...r/regression_gaussian_process_modular.txt b/...s/regression_gaussian_process_modular.txt → ...r/regression_gaussian_process_modular.txt
diff --git a/examples/documented/data b/examples/documented/data
diff --git a/examples/undocumented/elwms_static/foo.R → examples/elwms_static/foo.R b/examples/undocumented/elwms_static/foo.R → examples/elwms_static/foo.R
diff --git a/...cumented/elwms_static/octave_matplotlib.m → examples/elwms_static/octave_matplotlib.m b/...cumented/elwms_static/octave_matplotlib.m → examples/elwms_static/octave_matplotlib.m
diff --git a/...ocumented/elwms_static/octave_to_python.m → examples/elwms_static/octave_to_python.m b/...ocumented/elwms_static/octave_to_python.m → examples/elwms_static/octave_to_python.m
diff --git a/...s/undocumented/elwms_static/octave_to_r.m → examples/elwms_static/octave_to_r.m b/...s/undocumented/elwms_static/octave_to_r.m → examples/elwms_static/octave_to_r.m
diff --git a/...cumented/elwms_static/python_to_octave.py → examples/elwms_static/python_to_octave.py b/...cumented/elwms_static/python_to_octave.py → examples/elwms_static/python_to_octave.py
diff --git a/...s/undocumented/elwms_static/r_to_octave.m → examples/elwms_static/r_to_octave.m b/...s/undocumented/elwms_static/r_to_octave.m → examples/elwms_static/r_to_octave.m
diff --git a/...s/undocumented/elwms_static/r_to_python.R → examples/elwms_static/r_to_python.R b/...s/undocumented/elwms_static/r_to_python.R → examples/elwms_static/r_to_python.R
diff --git a/...ocumented/java_modular/CMakeLists.txt.old → examples/java_modular/CMakeLists.txt.old b/...ocumented/java_modular/CMakeLists.txt.old → examples/java_modular/CMakeLists.txt.old
diff --git a/examples/undocumented/java_modular/Load.java → examples/java_modular/Load.java b/examples/undocumented/java_modular/Load.java → examples/java_modular/Load.java
diff --git a/examples/undocumented/java_modular/check.sh → examples/java_modular/check.sh b/examples/undocumented/java_modular/check.sh → examples/java_modular/check.sh
diff --git a/...assifier_averaged_perceptron_modular.java → ...assifier_averaged_perceptron_modular.java b/...assifier_averaged_perceptron_modular.java → ...assifier_averaged_perceptron_modular.java
diff --git a/...assifier_domainadaptationsvm_modular.java → ...assifier_domainadaptationsvm_modular.java b/...assifier_domainadaptationsvm_modular.java → ...assifier_domainadaptationsvm_modular.java
diff --git a/...lassifier_gaussiannaivebayes_modular.java → ...lassifier_gaussiannaivebayes_modular.java b/...lassifier_gaussiannaivebayes_modular.java → ...lassifier_gaussiannaivebayes_modular.java
diff --git a/...a_modular/classifier_gmnpsvm_modular.java → ...a_modular/classifier_gmnpsvm_modular.java b/...a_modular/classifier_gmnpsvm_modular.java → ...a_modular/classifier_gmnpsvm_modular.java
diff --git a/...a_modular/classifier_gpbtsvm_modular.java → ...a_modular/classifier_gpbtsvm_modular.java b/...a_modular/classifier_gpbtsvm_modular.java → ...a_modular/classifier_gpbtsvm_modular.java
diff --git a/.../java_modular/classifier_knn_modular.java → .../java_modular/classifier_knn_modular.java b/.../java_modular/classifier_knn_modular.java → .../java_modular/classifier_knn_modular.java
diff --git a/...va_modular/classifier_larank_modular.java → ...va_modular/classifier_larank_modular.java b/...va_modular/classifier_larank_modular.java → ...va_modular/classifier_larank_modular.java
diff --git a/.../java_modular/classifier_lda_modular.java → .../java_modular/classifier_lda_modular.java b/.../java_modular/classifier_lda_modular.java → .../java_modular/classifier_lda_modular.java
diff --git a/...modular/classifier_liblinear_modular.java → ...modular/classifier_liblinear_modular.java b/...modular/classifier_liblinear_modular.java → ...modular/classifier_liblinear_modular.java
diff --git a/...ar/classifier_libsvm_minimal_modular.java → ...ar/classifier_libsvm_minimal_modular.java b/...ar/classifier_libsvm_minimal_modular.java → ...ar/classifier_libsvm_minimal_modular.java
diff --git a/...va_modular/classifier_libsvm_modular.java → ...va_modular/classifier_libsvm_modular.java b/...va_modular/classifier_libsvm_modular.java → ...va_modular/classifier_libsvm_modular.java
diff --git a/...ar/classifier_libsvmoneclass_modular.java → ...ar/classifier_libsvmoneclass_modular.java b/...ar/classifier_libsvmoneclass_modular.java → ...ar/classifier_libsvmoneclass_modular.java
diff --git a/...va_modular/classifier_mpdsvm_modular.java → ...va_modular/classifier_mpdsvm_modular.java b/...va_modular/classifier_mpdsvm_modular.java → ...va_modular/classifier_mpdsvm_modular.java
diff --git a/.../classifier_multiclasslibsvm_modular.java → .../classifier_multiclasslibsvm_modular.java b/.../classifier_multiclasslibsvm_modular.java → .../classifier_multiclasslibsvm_modular.java
diff --git a/...odular/classifier_perceptron_modular.java → ...odular/classifier_perceptron_modular.java b/...odular/classifier_perceptron_modular.java → ...odular/classifier_perceptron_modular.java
diff --git a/...ssifier_svmlight_linear_term_modular.java → ...ssifier_svmlight_linear_term_modular.java b/...ssifier_svmlight_linear_term_modular.java → ...ssifier_svmlight_linear_term_modular.java
diff --git a/..._modular/classifier_svmlight_modular.java → ..._modular/classifier_svmlight_modular.java b/..._modular/classifier_svmlight_modular.java → ..._modular/classifier_svmlight_modular.java
diff --git a/...ular/clustering_hierarchical_modular.java → ...ular/clustering_hierarchical_modular.java b/...ular/clustering_hierarchical_modular.java → ...ular/clustering_hierarchical_modular.java
diff --git a/...va_modular/clustering_kmeans_modular.java → ...va_modular/clustering_kmeans_modular.java b/...va_modular/clustering_kmeans_modular.java → ...va_modular/clustering_kmeans_modular.java
diff --git a/...ava_modular/converter_isomap_modular.java → ...ava_modular/converter_isomap_modular.java b/...ava_modular/converter_isomap_modular.java → ...ava_modular/converter_isomap_modular.java
diff --git a/...nverter_locallylinearembedding_modular.py → ...nverter_locallylinearembedding_modular.py b/...nverter_locallylinearembedding_modular.py → ...nverter_locallylinearembedding_modular.py
diff --git a/...rter_multidimensionalscaling_modular.java → ...rter_multidimensionalscaling_modular.java b/...rter_multidimensionalscaling_modular.java → ...rter_multidimensionalscaling_modular.java
diff --git a/..._modular/distance_braycurtis_modular.java → ..._modular/distance_braycurtis_modular.java b/..._modular/distance_braycurtis_modular.java → ..._modular/distance_braycurtis_modular.java
diff --git a/...va_modular/distance_canberra_modular.java → ...va_modular/distance_canberra_modular.java b/...va_modular/distance_canberra_modular.java → ...va_modular/distance_canberra_modular.java
diff --git a/...odular/distance_canberraword_modular.java → ...odular/distance_canberraword_modular.java b/...odular/distance_canberraword_modular.java → ...odular/distance_canberraword_modular.java
diff --git a/...a_modular/distance_chebyshew_modular.java → ...a_modular/distance_chebyshew_modular.java b/...a_modular/distance_chebyshew_modular.java → ...a_modular/distance_chebyshew_modular.java
diff --git a/...a_modular/distance_chisquare_modular.java → ...a_modular/distance_chisquare_modular.java b/...a_modular/distance_chisquare_modular.java → ...a_modular/distance_chisquare_modular.java
diff --git a/...java_modular/distance_cosine_modular.java → ...java_modular/distance_cosine_modular.java b/...java_modular/distance_cosine_modular.java → ...java_modular/distance_cosine_modular.java
diff --git a/...a_modular/distance_euclidean_modular.java → ...a_modular/distance_euclidean_modular.java b/...a_modular/distance_euclidean_modular.java → ...a_modular/distance_euclidean_modular.java
diff --git a/...va_modular/distance_geodesic_modular.java → ...va_modular/distance_geodesic_modular.java b/...va_modular/distance_geodesic_modular.java → ...va_modular/distance_geodesic_modular.java
diff --git a/...modular/distance_hammingword_modular.java → ...modular/distance_hammingword_modular.java b/...modular/distance_hammingword_modular.java → ...modular/distance_hammingword_modular.java
diff --git a/...java_modular/distance_jensen_modular.java → ...java_modular/distance_jensen_modular.java b/...java_modular/distance_jensen_modular.java → ...java_modular/distance_jensen_modular.java
diff --git a/...a_modular/distance_manhatten_modular.java → ...a_modular/distance_manhatten_modular.java b/...a_modular/distance_manhatten_modular.java → ...a_modular/distance_manhatten_modular.java
diff --git a/...dular/distance_manhattenword_modular.java → ...dular/distance_manhattenword_modular.java b/...dular/distance_manhattenword_modular.java → ...dular/distance_manhattenword_modular.java
diff --git a/...a_modular/distance_minkowski_modular.java → ...a_modular/distance_minkowski_modular.java b/...a_modular/distance_minkowski_modular.java → ...a_modular/distance_minkowski_modular.java
diff --git a/...modular/distance_normsquared_modular.java → ...modular/distance_normsquared_modular.java b/...modular/distance_normsquared_modular.java → ...modular/distance_normsquared_modular.java
diff --git a/...va_modular/distance_tanimoto_modular.java → ...va_modular/distance_tanimoto_modular.java b/...va_modular/distance_tanimoto_modular.java → ...va_modular/distance_tanimoto_modular.java
diff --git a/...dular/distribution_histogram_modular.java → ...dular/distribution_histogram_modular.java b/...dular/distribution_histogram_modular.java → ...dular/distribution_histogram_modular.java
diff --git a/...ava_modular/distribution_hmm_modular.java → ...ava_modular/distribution_hmm_modular.java b/...ava_modular/distribution_hmm_modular.java → ...ava_modular/distribution_hmm_modular.java
diff --git a/...dular/distribution_linearhmm_modular.java → ...dular/distribution_linearhmm_modular.java b/...dular/distribution_linearhmm_modular.java → ...dular/distribution_linearhmm_modular.java
diff --git a/...va_modular/distribution_ppwm_modular.java → ...va_modular/distribution_ppwm_modular.java b/...va_modular/distribution_ppwm_modular.java → ...va_modular/distribution_ppwm_modular.java
diff --git a/...n_contingencytableevaluation_modular.java → ...n_contingencytableevaluation_modular.java b/...n_contingencytableevaluation_modular.java → ...n_contingencytableevaluation_modular.java
diff --git a/.../evaluation_meansquarederror_modular.java → .../evaluation_meansquarederror_modular.java b/.../evaluation_meansquarederror_modular.java → .../evaluation_meansquarederror_modular.java
diff --git a/...valuation_multiclassaccuracy_modular.java → ...valuation_multiclassaccuracy_modular.java b/...valuation_multiclassaccuracy_modular.java → ...valuation_multiclassaccuracy_modular.java
diff --git a/...lar/evaluation_prcevaluation_modular.java → ...lar/evaluation_prcevaluation_modular.java b/...lar/evaluation_prcevaluation_modular.java → ...lar/evaluation_prcevaluation_modular.java
diff --git a/...lar/evaluation_rocevaluation_modular.java → ...lar/evaluation_rocevaluation_modular.java b/...lar/evaluation_rocevaluation_modular.java → ...lar/evaluation_rocevaluation_modular.java
diff --git a/.../java_modular/features_dense_modular.java → .../java_modular/features_dense_modular.java b/.../java_modular/features_dense_modular.java → .../java_modular/features_dense_modular.java
diff --git a/...ed/java_modular/features_snp_modular.java → ...es/java_modular/features_snp_modular.java b/...ed/java_modular/features_snp_modular.java → ...es/java_modular/features_snp_modular.java
diff --git a/...tures_string_char_compressed_modular.java → ...tures_string_char_compressed_modular.java b/...tures_string_char_compressed_modular.java → ...tures_string_char_compressed_modular.java
diff --git a/...modular/features_string_char_modular.java → ...modular/features_string_char_modular.java b/...modular/features_string_char_modular.java → ...modular/features_string_char_modular.java
diff --git a/...ar/features_string_file_char_modular.java → ...ar/features_string_file_char_modular.java b/...ar/features_string_file_char_modular.java → ...ar/features_string_file_char_modular.java
diff --git a/...modular/features_string_file_modular.java → ...modular/features_string_file_modular.java b/...modular/features_string_file_modular.java → ...modular/features_string_file_modular.java
diff --git a/...ar/features_string_hashed_wd_modular.java → ...ar/features_string_hashed_wd_modular.java b/...ar/features_string_hashed_wd_modular.java → ...ar/features_string_hashed_wd_modular.java
diff --git a/...atures_string_sliding_window_modular.java → ...atures_string_sliding_window_modular.java b/...atures_string_sliding_window_modular.java → ...atures_string_sliding_window_modular.java
diff --git a/...odular/features_string_ulong_modular.java → ...odular/features_string_ulong_modular.java b/...odular/features_string_ulong_modular.java → ...odular/features_string_ulong_modular.java
diff --git a/...modular/features_string_word_modular.java → ...modular/features_string_word_modular.java b/...modular/features_string_word_modular.java → ...modular/features_string_word_modular.java
diff --git a/...umented/java_modular/foo_uncompressed.str → examples/java_modular/foo_uncompressed.str b/...umented/java_modular/foo_uncompressed.str → examples/java_modular/foo_uncompressed.str
diff --git a/...ed/java_modular/kernel_anova_modular.java → ...es/java_modular/kernel_anova_modular.java b/...ed/java_modular/kernel_anova_modular.java → ...es/java_modular/kernel_anova_modular.java
diff --git a/...nted/java_modular/kernel_auc_modular.java → ...ples/java_modular/kernel_auc_modular.java b/...nted/java_modular/kernel_auc_modular.java → ...ples/java_modular/kernel_auc_modular.java
diff --git a/...d/java_modular/kernel_cauchy_modular.java → ...s/java_modular/kernel_cauchy_modular.java b/...d/java_modular/kernel_cauchy_modular.java → ...s/java_modular/kernel_cauchy_modular.java
diff --git a/...ted/java_modular/kernel_chi2_modular.java → ...les/java_modular/kernel_chi2_modular.java b/...ted/java_modular/kernel_chi2_modular.java → ...les/java_modular/kernel_chi2_modular.java
diff --git a/...java_modular/kernel_circular_modular.java → ...java_modular/kernel_circular_modular.java b/...java_modular/kernel_circular_modular.java → ...java_modular/kernel_circular_modular.java
diff --git a/.../kernel_combined_custom_poly_modular.java → .../kernel_combined_custom_poly_modular.java b/.../kernel_combined_custom_poly_modular.java → .../kernel_combined_custom_poly_modular.java
diff --git a/...java_modular/kernel_combined_modular.java → ...java_modular/kernel_combined_modular.java b/...java_modular/kernel_combined_modular.java → ...java_modular/kernel_combined_modular.java
diff --git a/...lar/kernel_comm_ulong_string_modular.java → ...lar/kernel_comm_ulong_string_modular.java b/...lar/kernel_comm_ulong_string_modular.java → ...lar/kernel_comm_ulong_string_modular.java
diff --git a/...ular/kernel_comm_word_string_modular.java → ...ular/kernel_comm_word_string_modular.java b/...ular/kernel_comm_word_string_modular.java → ...ular/kernel_comm_word_string_modular.java
diff --git a/...ed/java_modular/kernel_const_modular.java → ...es/java_modular/kernel_const_modular.java b/...ed/java_modular/kernel_const_modular.java → ...es/java_modular/kernel_const_modular.java
diff --git a/...d/java_modular/kernel_custom_modular.java → ...s/java_modular/kernel_custom_modular.java b/...d/java_modular/kernel_custom_modular.java → ...s/java_modular/kernel_custom_modular.java
diff --git a/...ted/java_modular/kernel_diag_modular.java → ...les/java_modular/kernel_diag_modular.java b/...ted/java_modular/kernel_diag_modular.java → ...les/java_modular/kernel_diag_modular.java
diff --git a/...java_modular/kernel_distance_modular.java → ...java_modular/kernel_distance_modular.java b/...java_modular/kernel_distance_modular.java → ...java_modular/kernel_distance_modular.java
diff --git a/...dular/kernel_distantsegments_modular.java → ...dular/kernel_distantsegments_modular.java b/...dular/kernel_distantsegments_modular.java → ...dular/kernel_distantsegments_modular.java
diff --git a/...a_modular/kernel_exponential_modular.java → ...a_modular/kernel_exponential_modular.java b/...a_modular/kernel_exponential_modular.java → ...a_modular/kernel_exponential_modular.java
diff --git a/...d/java_modular/kernel_fisher_modular.java → ...s/java_modular/kernel_fisher_modular.java b/...d/java_modular/kernel_fisher_modular.java → ...s/java_modular/kernel_fisher_modular.java
diff --git a/...r/kernel_fixed_degree_string_modular.java → ...r/kernel_fixed_degree_string_modular.java b/...r/kernel_fixed_degree_string_modular.java → ...r/kernel_fixed_degree_string_modular.java
diff --git a/...java_modular/kernel_gaussian_modular.java → ...java_modular/kernel_gaussian_modular.java b/...java_modular/kernel_gaussian_modular.java → ...java_modular/kernel_gaussian_modular.java
diff --git a/...odular/kernel_gaussian_shift_modular.java → ...odular/kernel_gaussian_shift_modular.java b/...odular/kernel_gaussian_shift_modular.java → ...odular/kernel_gaussian_shift_modular.java
diff --git a/...kernel_histogram_word_string_modular.java → ...kernel_histogram_word_string_modular.java b/...kernel_histogram_word_string_modular.java → ...kernel_histogram_word_string_modular.java
diff --git a/...r/kernel_inversemultiquadric_modular.java → ...r/kernel_inversemultiquadric_modular.java b/...r/kernel_inversemultiquadric_modular.java → ...r/kernel_inversemultiquadric_modular.java
diff --git a/...ented/java_modular/kernel_io_modular.java → examples/java_modular/kernel_io_modular.java b/...ented/java_modular/kernel_io_modular.java → examples/java_modular/kernel_io_modular.java
diff --git a/...a_modular/kernel_linear_byte_modular.java → ...a_modular/kernel_linear_byte_modular.java b/...a_modular/kernel_linear_byte_modular.java → ...a_modular/kernel_linear_byte_modular.java
diff --git a/...d/java_modular/kernel_linear_modular.java → ...s/java_modular/kernel_linear_modular.java b/...d/java_modular/kernel_linear_modular.java → ...s/java_modular/kernel_linear_modular.java
diff --git a/...modular/kernel_linear_string_modular.java → ...modular/kernel_linear_string_modular.java b/...modular/kernel_linear_string_modular.java → ...modular/kernel_linear_string_modular.java
diff --git a/...a_modular/kernel_linear_word_modular.java → ...a_modular/kernel_linear_word_modular.java b/...a_modular/kernel_linear_word_modular.java → ...a_modular/kernel_linear_word_modular.java
diff --git a/...ernel_local_alignment_string_modular.java → ...ernel_local_alignment_string_modular.java b/...ernel_local_alignment_string_modular.java → ...ernel_local_alignment_string_modular.java
diff --git a/...nel_locality_improved_string_modular.java → ...nel_locality_improved_string_modular.java b/...nel_locality_improved_string_modular.java → ...nel_locality_improved_string_modular.java
diff --git a/...nted/java_modular/kernel_log_modular.java → ...ples/java_modular/kernel_log_modular.java b/...nted/java_modular/kernel_log_modular.java → ...ples/java_modular/kernel_log_modular.java
diff --git a/...lar/kernel_match_word_string_modular.java → ...lar/kernel_match_word_string_modular.java b/...lar/kernel_match_word_string_modular.java → ...lar/kernel_match_word_string_modular.java
diff --git a/..._modular/kernel_multiquadric_modular.java → ..._modular/kernel_multiquadric_modular.java b/..._modular/kernel_multiquadric_modular.java → ..._modular/kernel_multiquadric_modular.java
diff --git a/..._modular/kernel_oligo_string_modular.java → ..._modular/kernel_oligo_string_modular.java b/..._modular/kernel_oligo_string_modular.java → ..._modular/kernel_oligo_string_modular.java
diff --git a/...lar/kernel_poly_match_string_modular.java → ...lar/kernel_poly_match_string_modular.java b/...lar/kernel_poly_match_string_modular.java → ...lar/kernel_poly_match_string_modular.java
diff --git a/...ernel_poly_match_word_string_modular.java → ...ernel_poly_match_word_string_modular.java b/...ernel_poly_match_word_string_modular.java → ...ernel_poly_match_word_string_modular.java
diff --git a/...ted/java_modular/kernel_poly_modular.java → ...les/java_modular/kernel_poly_modular.java b/...ted/java_modular/kernel_poly_modular.java → ...les/java_modular/kernel_poly_modular.java
diff --git a/...ed/java_modular/kernel_power_modular.java → ...es/java_modular/kernel_power_modular.java b/...ed/java_modular/kernel_power_modular.java → ...es/java_modular/kernel_power_modular.java
diff --git a/...lar/kernel_rationalquadratic_modular.java → ...lar/kernel_rationalquadratic_modular.java b/...lar/kernel_rationalquadratic_modular.java → ...lar/kernel_rationalquadratic_modular.java
diff --git a/.../kernel_salzberg_word_string_modular.java → .../kernel_salzberg_word_string_modular.java b/.../kernel_salzberg_word_string_modular.java → .../kernel_salzberg_word_string_modular.java
diff --git a/.../java_modular/kernel_sigmoid_modular.java → .../java_modular/kernel_sigmoid_modular.java b/.../java_modular/kernel_sigmoid_modular.java → .../java_modular/kernel_sigmoid_modular.java
diff --git a/...ple_locality_improved_string_modular.java → ...ple_locality_improved_string_modular.java b/...ple_locality_improved_string_modular.java → ...ple_locality_improved_string_modular.java
diff --git a/...ava_modular/kernel_spherical_modular.java → ...ava_modular/kernel_spherical_modular.java b/...ava_modular/kernel_spherical_modular.java → ...ava_modular/kernel_spherical_modular.java
diff --git a/...d/java_modular/kernel_spline_modular.java → ...s/java_modular/kernel_spline_modular.java b/...d/java_modular/kernel_spline_modular.java → ...s/java_modular/kernel_spline_modular.java
diff --git a/...nted/java_modular/kernel_top_modular.java → ...ples/java_modular/kernel_top_modular.java b/...nted/java_modular/kernel_top_modular.java → ...ples/java_modular/kernel_top_modular.java
diff --git a/...java_modular/kernel_tstudent_modular.java → ...java_modular/kernel_tstudent_modular.java b/...java_modular/kernel_tstudent_modular.java → ...java_modular/kernel_tstudent_modular.java
diff --git a/...ted/java_modular/kernel_wave_modular.java → ...les/java_modular/kernel_wave_modular.java b/...ted/java_modular/kernel_wave_modular.java → ...les/java_modular/kernel_wave_modular.java
diff --git a/.../java_modular/kernel_wavelet_modular.java → .../java_modular/kernel_wavelet_modular.java b/.../java_modular/kernel_wavelet_modular.java → .../java_modular/kernel_wavelet_modular.java
diff --git a/...el_weighted_comm_word_string_modular.java → ...el_weighted_comm_word_string_modular.java b/...el_weighted_comm_word_string_modular.java → ...el_weighted_comm_word_string_modular.java
diff --git a/...ghted_degree_position_string_modular.java → ...ghted_degree_position_string_modular.java b/...ghted_degree_position_string_modular.java → ...ghted_degree_position_string_modular.java
diff --git a/...ernel_weighted_degree_string_modular.java → ...ernel_weighted_degree_string_modular.java b/...ernel_weighted_degree_string_modular.java → ...ernel_weighted_degree_string_modular.java
diff --git a/...ed/java_modular/mkl_binclass_modular.java → ...es/java_modular/mkl_binclass_modular.java b/...ed/java_modular/mkl_binclass_modular.java → ...es/java_modular/mkl_binclass_modular.java
diff --git a/.../java_modular/mkl_multiclass_modular.java → .../java_modular/mkl_multiclass_modular.java b/.../java_modular/mkl_multiclass_modular.java → .../java_modular/mkl_multiclass_modular.java
diff --git a/...dular/preprocessor_kernelpca_modular.java → ...dular/preprocessor_kernelpca_modular.java b/...dular/preprocessor_kernelpca_modular.java → ...dular/preprocessor_kernelpca_modular.java
diff --git a/...ular/preprocessor_logplusone_modular.java → ...ular/preprocessor_logplusone_modular.java b/...ular/preprocessor_logplusone_modular.java → ...ular/preprocessor_logplusone_modular.java
diff --git a/...modular/preprocessor_normone_modular.java → ...modular/preprocessor_normone_modular.java b/...modular/preprocessor_normone_modular.java → ...modular/preprocessor_normone_modular.java
diff --git a/...ava_modular/preprocessor_pca_modular.java → ...ava_modular/preprocessor_pca_modular.java b/...ava_modular/preprocessor_pca_modular.java → ...ava_modular/preprocessor_pca_modular.java
diff --git a/...preprocessor_prunevarsubmean_modular.java → ...preprocessor_prunevarsubmean_modular.java b/...preprocessor_prunevarsubmean_modular.java → ...preprocessor_prunevarsubmean_modular.java
diff --git a/...or_randomfouriergausspreproc_modular.java → ...or_randomfouriergausspreproc_modular.java b/...or_randomfouriergausspreproc_modular.java → ...or_randomfouriergausspreproc_modular.java
diff --git a/...preprocessor_sortulongstring_modular.java → ...preprocessor_sortulongstring_modular.java b/...preprocessor_sortulongstring_modular.java → ...preprocessor_sortulongstring_modular.java
diff --git a/.../preprocessor_sortwordstring_modular.java → .../preprocessor_sortwordstring_modular.java b/.../preprocessor_sortwordstring_modular.java → .../preprocessor_sortwordstring_modular.java
diff --git a/.../java_modular/regression_krr_modular.java → .../java_modular/regression_krr_modular.java b/.../java_modular/regression_krr_modular.java → .../java_modular/regression_krr_modular.java
diff --git a/...va_modular/regression_libsvr_modular.java → ...va_modular/regression_libsvr_modular.java b/...va_modular/regression_libsvr_modular.java → ...va_modular/regression_libsvr_modular.java