Skip to content

Cleanup and optimize transformers #4348

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Conversation

vinx13
Copy link
Member

@vinx13 vinx13 commented Jun 28, 2018

  • Use linalg in NormOne
  • Optimize PruneVarSubMean

@vinx13 vinx13 changed the title Cleanup and optimize code transformers Cleanup and optimize transformers Jun 28, 2018
@vigsterkr vigsterkr force-pushed the feature/transformers branch from 550639e to af8af72 Compare June 28, 2018 10:49
@karlnapf
Copy link
Member

This needs a rebase

@karlnapf
Copy link
Member

Btw whenever you make something linalg, pls ensure there is some test coverage of the changes lines, so that we at least know he results didn’t change in the integration test examples

@vinx13 vinx13 force-pushed the feature/transformers_update branch from dedcb4a to bdacb07 Compare June 28, 2018 10:58
EXPECT_EQ(v.vlen, num_features);
for (auto j : range(v.vlen))
{
EXPECT_DOUBLE_EQ(v[j], data[num_features * i + j] / norm[i]);
Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

cant we use operator() here?

{
SGVector<float64_t> v = feats->get_feature_vector(i);
auto result = transformer->apply_to_feature_vector(v);
EXPECT_EQ(result.vlen, num_features);
Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

ASSERT_EQ to avoid segfault

@@ -102,7 +102,7 @@ void CPruneVarSubMean::cleanup()
SGMatrix<float64_t>
CPruneVarSubMean::apply_to_matrix(SGMatrix<float64_t> matrix)
{
ASSERT(m_initialized)
REQUIRE(m_initialized, "Transformer has not been fitted.\n");
Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

offtopic: I would love to move all those general checks to base classes so that they dont get repeated in every specialization....
any thoughts on this

Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

shouldn't we use a different exception type other than ShogunException

@vigsterkr vigsterkr force-pushed the feature/transformers branch 2 times, most recently from 77a9f85 to 8711ea6 Compare July 10, 2018 15:12
@vinx13 vinx13 force-pushed the feature/transformers_update branch from c1b0299 to 47363cb Compare July 10, 2018 15:27
@vinx13 vinx13 force-pushed the feature/transformers_update branch from 47363cb to 918fead Compare July 11, 2018 00:57
@@ -102,7 +102,7 @@ void CPruneVarSubMean::cleanup()
SGMatrix<float64_t>
CPruneVarSubMean::apply_to_matrix(SGMatrix<float64_t> matrix)
{
ASSERT(m_initialized)
REQUIRE(m_initialized, "Transformer has not been fitted.\n");
Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

shouldn't we use a different exception type other than ShogunException

@@ -132,31 +132,18 @@ CPruneVarSubMean::apply_to_matrix(SGMatrix<float64_t> matrix)
/// result in feature matrix
SGVector<float64_t> CPruneVarSubMean::apply_to_feature_vector(SGVector<float64_t> vector)
{
float64_t* ret=NULL;
REQUIRE(m_initialized, "Transformer has not been fitted.\n");
Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

shouldn't we use a different exception type other than ShogunException

MS_NOT_AVAILABLE);
}

void CTransformer::check_fitted() const
Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

i would rather go with the java like: is_fitted or is_fit depending which english we'd like to go with :) but let's stick to british (non north american english as in case of the exception type naming)

CTransformer::CTransformer() : CSGObject()
{
SG_ADD(
&m_fitted, "fitted", "Whether the transformer has been fitted.",
Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

let's register this param as is_fitted

@vigsterkr vigsterkr merged commit a241ab1 into shogun-toolbox:feature/transformers Jul 11, 2018
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

Successfully merging this pull request may close these issues.

4 participants