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New version of RCy3, redesigned and collaboratively maintained by Cytoscape developer community
Tissue-specific variant annotation pipeline
R package with generic tools for data exploration
Shraddha's fork of RCircos — Circos 2D Track Plot. Original package homepage: http://bitbucket.org/henryhzhang/rcircos
Software used to generate the results in the neuronal case/control EWAS reported in:
Implementation of modified mashup algorithm in Julia Language.
Plots data associated with genomic intervals along chromosomal ideogram.
Markdown version of Cytoscape manual
Integrate mashup algorithm for the network integration.
Useful calculations and code for planning genomics experiments
Finds tagSNPs overlapping regions of interest. Modified version of Simon Coetzee's BioC package
Tutorials for Unix/HPC/other tools to get genomics done
Multi-threaded C++ parser to convert registered ChIP-SEQ peak IDs (HOMER) to table of average peak intensities
Miscellaneous R scripts to do useful things
This project develops the program FORGE. It allows to calculate gene p-values from Genome-Wide Association Data using multivariate methods. The gene-level statistics can be used for pathway or othe…
sandbox of C++ constructs
Epigenome Data Browser, an interactive statistical browser for genomic datasets