From 766ed9ca6533d8a5f9314cc78516782198e719cc Mon Sep 17 00:00:00 2001
From: Julian McClellan <juliancmcclellan@gmail.com>
Date: Thu, 19 Oct 2023 08:48:31 -0500
Subject: [PATCH] Formatting and typo fixes

---
 R/ctwas_process_regions.R | 3 +--
 R/ctwas_rss.R             | 2 +-
 2 files changed, 2 insertions(+), 3 deletions(-)

diff --git a/R/ctwas_process_regions.R b/R/ctwas_process_regions.R
index eb6d1cb9..ab1b2cbd 100644
--- a/R/ctwas_process_regions.R
+++ b/R/ctwas_process_regions.R
@@ -54,8 +54,7 @@ index_regions <- function(regionfile,
                           outputdir = getwd(),
                           ncore = 1,
                           reuse_R_gene = F,
-			  chrom = 1:22,
-			  ) {
+			  chrom = 1:22) {
 
   if (is.null(pvarfs) & is.null(ld_Rfs)){
     stop("Stopped: missing LD/genotype information.
diff --git a/R/ctwas_rss.R b/R/ctwas_rss.R
index 4b959667..c8730869 100644
--- a/R/ctwas_rss.R
+++ b/R/ctwas_rss.R
@@ -151,7 +151,7 @@ ctwas_rss <- function(
   logfile = NULL,
   merge = TRUE,
   fine_map = T,
-  chrom=1:22
+  chrom = 1:22
   ){
 
   if (!is.null(logfile)){