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Hypermedia API for NCBO's ontology-related projects
Jobs that run on a regular basis in the NCBO infrastructure
Models and serializers for ontologies and related artifacts backed by 4store
A command line utility that wraps the Java OWL-API to parse RDFS, OWL and OBO ontologies.
To automatically process a piece of data text to annotate it with relevant ontology concepts and return the annotations.
Graph Oriented Objects (GOO) for Ruby. A RDF/SPARQL based ORM.
A Ruby client for accessing NCBO's hypermedia api
SPARQL client for Ruby.
Web service to add functionalities to the http://bioportal.bioontology.org and similar ontology annotators
Website source code for w3id.org
A rails application for biological ontologies, (originally from http://bioportal.bioontology.org). But reused in two project at LIRMM.
Metadata for Ontology Description and Publication Ontology
A Docker compose to have a fully working BioPortal development environment
SKOS version of CLADIMED
Biotex application (automatic extraction of biomedical terms)
Workflow to use Unitex with the SIFR Annotator
Java Scripts to process Ontologies using OWLAPI for the SIFR project
These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This is part of the BioPortal project.
Misc experimentations of the Viewpoints project.
MOD Metadata Vocabulary for describing and publishing ontologies.
A simple servlet to resolve purl.lirmm.fr URIs
Ruby scripts to import ontologies from BioPortal or cropontology.org to a BioPortal Appliance
Dictionnary/lexicon creation from a BioPortal ontology repository
Project of Pierre and Olivier for semantic distance web application.
This is the Kernel module of the ViewpointS API, an awesome java Subjective Knowledge Representation API based one the ViewpointS formalism
Java (Servlet/JSP) interface of the BioTex application