AnnotatorPlus and LIRMM Annotation Proxy
Initial Author: Julien Diener
Architectural refactoring: Andon Tchechmedjiev
Includes work from: Soumia Melzi and Emmanuel Castanier
masterto deploy to
/annotator, for the LIRMM Bioportal Annotator Proxy with Bioportal running on the same server
ncbo_annotatorto deploy to
/ncbo_annotatorplusto add post-annotation capabilities to the NCBO BioPortal Annotator
This project is structured as a multimodule maven project and requires maven for development. It is recommended to use and IDE that includes built-in maven support. As of 2016, NetBeans can have some issues with complex maven projects, it is therefore advisable to use Eclipse or IntelliJ.
The modules of the project are the following:
- sifrbioportal-bioportal-annotation-model: This is the core module of the project. It implements a custom (non-standard) JSON-LD datamodel matching that of NCBO bioportal and adds additional annotation capabilities matching additional post-processing annotations implemented in the proxy, as well as input/output capabilities from and to various formats.
Some localdev dependencies are required and can be found in the localdev-dep folder.
The dependencies will be installed automatically upon performing
mvn clean install for the first time.
Note that eclipse does not automatically update the eclipse project upon changes in the pom.xml files, you may need to update the project manually:
- in the command line, execute
- close and reopen your project