diff --git a/NEWS.md b/NEWS.md index 44d9b1a..c5e58d0 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,7 +1,8 @@ # Version 1.6.10 * Fixed some erroneous drug classifications -* CIViC update (20240618) +* CIViC update (20240621) +* OTP update (2024.06) # Version 1.6.8 (June 7th 2024) diff --git a/R/sysdata.rda b/R/sysdata.rda index c0759ef..fe5e03b 100644 Binary files a/R/sysdata.rda and b/R/sysdata.rda differ diff --git a/data-raw/drug_name_black_list.txt b/data-raw/drug_name_black_list.txt index ac419f1..0da92fe 100644 --- a/data-raw/drug_name_black_list.txt +++ b/data-raw/drug_name_black_list.txt @@ -5,6 +5,8 @@ Tesmilifene Hydrochloride 8H9 131I ABC-294640 AXL-1717 +AZD-7451 +TAS-115 Lenperone Hydrochloride ABT-126 AZD-3759 diff --git a/data-raw/drug_utilities.R b/data-raw/drug_utilities.R index 384c742..d36c42b 100644 --- a/data-raw/drug_utilities.R +++ b/data-raw/drug_utilities.R @@ -2685,6 +2685,11 @@ assign_drug_category <- function(drug_df = NULL, stringr::str_detect( atc_code_level3, "(\\|L01XX[A-J])|(^L01XX[A-J])" ) ~ "cancer_targeted_therapy", + !is.na(target_symbol) & + !is.na(atc_code_level3) & + stringr::str_detect( + atc_code_level3, "(\\|L01XXM)|(^L01XXM)" + ) ~ "cancer_targeted_therapy", !is.na(target_symbol) & !is.na(atc_code_level3) & stringr::str_detect( diff --git a/data-raw/metadata_pharm_oncox.xlsx b/data-raw/metadata_pharm_oncox.xlsx index 15c418a..71b8771 100644 Binary files a/data-raw/metadata_pharm_oncox.xlsx and b/data-raw/metadata_pharm_oncox.xlsx differ diff --git a/inst/CITATION b/inst/CITATION index 0066214..05a54df 100644 --- a/inst/CITATION +++ b/inst/CITATION @@ -5,10 +5,10 @@ citEntry( title = "pharmOncoX: Targeted and non-targeted anti-cancer drugs and drug regimens", author = "Sigve Nakken", year = "2024", - note = "R package version 1.6.10", + note = "R package version 1.6.9", url = "https://github.com/sigven/pharmOncoX", textVersion = paste("Nakken S. ","(2024)", " pharmOncoX: Targeted and non-targeted anti-cancer drugs and drug regimens.", - " R package version 1.6.10.", + " R package version 1.6.9.", " (https://github.com/sigven/pharmOncoX)") ) diff --git a/vignettes/pharmOncoX.Rmd b/vignettes/pharmOncoX.Rmd index 5a96d19..27642c0 100644 --- a/vignettes/pharmOncoX.Rmd +++ b/vignettes/pharmOncoX.Rmd @@ -35,8 +35,6 @@ remotes::install_github('sigven/pharmOncoX') library(pharmOncoX) cache_dir <- tempdir() -#cache_dir <- -# "/Users/sigven/project_data/packages/package__pharmOncoX/pharmOncoX/data-raw/gd_local" ```