some links to projects/tools related to "open science".
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.gitignore added a few items to the list Apr 16, 2017
README.md sorted Oct 31, 2017
sort Use sponge Aug 1, 2015
sortLists.hs use stack instead of some random runhaskell Apr 30, 2016

README.md

awesome-open-science

some links to projects/tools related to "open science". add to this by forking and pull-requesting.

in a similar vein to awesome-awesomeness.

computation environments

  • IPython Notebook (evolving into Jupyter): A browser-based notebook with support for code, rich text, mathematical expressions, inline plots and other rich media.
  • Maxima: A computer algebra system developed in Lisp for (symbolic) mathematical computations.
  • Sage Math Cloud: Provides Sage, Python, and other environments for computing on the cloud; also provides terminal access and git commands for cloning repositories.

peer-review

  • Hypothes.is: Steps towards annotating and peer-reviewing the Web.

document writing

  • Authorea: Backed by Pandoc and Git for collaborative document writing.
  • ShareLaTeX: Online collaborative LaTeX editor
  • WriteLaTeX: Online collaborative LaTeX editor

discovery

data management

  • Academic Torrents: Publish large datasets as torrents.
  • Dat-Data: Dat is an open source project that provides a streaming interface between every file format and data storage backend.

reproducibility

project management

  • GitHub: (Naturally.)
  • Open science framework: Collect together various sources (GitHub, DropBox, etc) into one spot.
  • Trello and Libreboard (open source self-hosted alternative): Keep track of to-do items in various lists of lists; keep track of figures, comments, questions, issues, etc.

organisations

journals/preprint servers

  • ArXiv: e-Print archive
  • ECCC: The Electronic Colloquium on Computational Complexity - new papers in TCS.
  • SciRate: Front for the arXiv, with voting and comments and accounts.

training/meetups

community wikis

  • Complexity Zoo: Definitions of complexity classes in theoreticaly computer science.
  • Mozilla Science Lab Forum
  • nLab: A wiki-lab for collaborative work on Mathematics, Physics and Philosophy — especially from the n-point of view: insofar as these subjects are usefully treated with tools and notions of category theory or higher category theory.

books

operating systems

  • Debian Science: Debian

    operating system has many science related packages for different scientific blends and tastes.

  • Fedora Astronomy Spin: Fedora

    Fedora Astronomy brings a complete open source toolchain to both amateur
    and professional astronomers.