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Commits on Sep 9, 2016
  1. Revert "update ivy_mike dependency"

    sim82 committed Sep 9, 2016
    This reverts commit 1473821.
Commits on Sep 4, 2016
  1. update ivy_mike dependency

    sim82 committed Sep 4, 2016
  2. add gitignore file

    sim82 committed Sep 4, 2016
Commits on Jun 9, 2016
Commits on Jun 6, 2016
  1. fixed build on visual c++ 2015

    sim82 committed Jun 6, 2016
Commits on Jun 4, 2016
  1. add static build script

    sim82 committed Jun 4, 2016
Commits on Jun 11, 2014
  1. update tar_release.sh

    sim82 committed Jun 11, 2014
  2. support '.' character (gap)

    sim82 committed Jun 11, 2014
    bumped version to 2.4
Commits on Jan 31, 2013
Commits on Jan 30, 2013
  1. removed genasign_blast

    sim82 committed Jan 30, 2013
Commits on Jan 29, 2013
  1. Merge branch 'master' of github.com:sim82/papara_nt

    sim82 committed Jan 29, 2013
    Conflicts:
    	CMakeLists.txt
Commits on Jan 22, 2013
  1. added phy_megamerge: merge sequences from multiple (multi-gene) phyli…

    sim82 committed Jan 22, 2013
    …p files based on common sequence name prefixes.
Commits on Dec 4, 2012
  1. fixes fo rlarge multigene analysis

    Simon Berger authored and sim82 committed Dec 4, 2012
Commits on Nov 27, 2012
  1. fixed crash in the alignment kernel, which was (hopefully) casued by …

    sim82 committed Nov 27, 2012
    …'overzealous' use of the __restrict keyword on visual c++.
    
    added/use papara::get_version_string().
Commits on Nov 26, 2012
Commits on Nov 23, 2012
Commits on Nov 22, 2012
  1. fixed 64bit vc++ warning. removed debug code that caused false-positi…

    sim82 committed Nov 22, 2012
    …ve score error exception
  2. more c++11 windows fixes

    sim82 committed Nov 22, 2012
Commits on Nov 21, 2012
  1. c++11 fix on gcc

    sim82 committed Nov 21, 2012
Commits on Nov 20, 2012
  1. Merge branch 'cpp11' into common_cpp

    sim82 committed Nov 20, 2012
    trying to unify c++98 and c++11 codebases in a single branch.
    
    Conflicts:
    	CMakeLists.txt
    	aligned_buffer.h
    	papara.h
    	stepwise_addition.cpp
    	stepwise_addition_pro.cpp
    	vec_unit.h
  2. Merge branch 'master' of github.com:sim82/papara_nt

    sim82 committed Nov 20, 2012
    Conflicts:
    	papara.cpp
Commits on Sep 21, 2012
  1. fixed a few warnings.

    sim82 committed Sep 21, 2012
  2. work on multigene pipeline.

    sim82 committed Sep 21, 2012
Commits on Sep 17, 2012