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Fast, modular reference implementation of Instance Segmentation and Object Detection algorithms in PyTorch.
Docker file for pysmFISH
*fish -- a standardized analysis pipeline for image-based transcriptomics
Dockerfile of my working environment
Mask R-CNN for object detection and instance segmentation on Keras and TensorFlow
Python port of ImageJ's background subtraction technique for 8-bit images
Patched fonts for Powerline users.
Read ROI files .zip or .roi generated with ImageJ.
HTCondor cluster manager for Dask.distributed (experimental)
A curated list of deep learning resources for computer vision
Import .mbox files into G Suite
A curated list of awesome computer vision resources
Notebooks with image analysis notes. Thanks to everybody that provided inspiration and material
Code snippets wrote for collaborators
An implementation of Al-Kofahi's 2010 paper on nuclear segmentation using graph cutting methods.
RISE: "Live" Reveal.js Jupyter/IPython Slideshow Extension
Bootstrap 3 theme for Pelican
A minimalist Pelican theme.
MPISubmit - Simple data parallelization using MPI
Python module that makes working with XML feel like you are working with JSON
Mail Importer for Gmail will upload the contents of a Thunderbird mail archive to Gmail and do its best to preserve the read state, flagged state, and folders of the messages.
Piotr's Image & Video Matlab Toolbox
Simple access to NIS Elements image files.
Got Your Back (GYB) is a command line tool for backing up your Gmail messages to your local computer. It uses the standard IMAP protocol but also takes advantage of some custom Gmail IMAP extension…
Python Module for Mean Shift Image Segmentation
Microscopy Image Stitching Tool for Fiji and standalone