GitHub - singhal/AWT_delimit: scripts for project delimiting AWT Eugongylus skinks

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 7 Commits
AWT_generate_shell_scripts.py		AWT_generate_shell_scripts.py
PRG.tar.gz		PRG.tar.gz
add_outgroup_fullspeciestree.py		add_outgroup_fullspeciestree.py
align_reads2.py		align_reads2.py
annotate_exons_PRG.py		annotate_exons_PRG.py
beast_run.py		beast_run.py
calculate_dstat.py		calculate_dstat.py
calculate_dstat2.py		calculate_dstat2.py
calculate_mtDNA_divergence.py		calculate_mtDNA_divergence.py
calculate_nDNA_divergence.py		calculate_nDNA_divergence.py
call_variants.py		call_variants.py
chop_read_names.py		chop_read_names.py
convert_nexus_phylip.py		convert_nexus_phylip.py
correct_reference_bias.py		correct_reference_bias.py
count_depth.py		count_depth.py
count_trim_reads.py		count_trim_reads.py
filter_vcf.py		filter_vcf.py
generate_shell_type1.py		generate_shell_type1.py
generate_shell_type2.py		generate_shell_type2.py
identify_exon_boundaries_alignments.py		identify_exon_boundaries_alignments.py
make_test_PRG.py		make_test_PRG.py
match_contigs_to_probes_exon.py		match_contigs_to_probes_exon.py
phylogeny_align_genetrees.py		phylogeny_align_genetrees.py
phylogeny_haplotype_make_alignments.py		phylogeny_haplotype_make_alignments.py
phylogeny_prep_astrid_astral.py		phylogeny_prep_astrid_astral.py
phylogeny_prepare_BPP.py		phylogeny_prepare_BPP.py
phylogeny_prepare_concatenated_exons.py		phylogeny_prepare_concatenated_exons.py
phylogeny_prepare_partitionfinder.py		phylogeny_prepare_partitionfinder.py
phylogeny_prepare_partitionfinder_exons.py		phylogeny_prepare_partitionfinder_exons.py
phylogeny_prepare_starbeast.py		phylogeny_prepare_starbeast.py
prepare_phylonet.py		prepare_phylonet.py
prepare_phylonet_coggeri.py		prepare_phylonet_coggeri.py
prepare_phylonet_original1.py		prepare_phylonet_original1.py
prepare_phylonet_original2.py		prepare_phylonet_original2.py
run_count.py		run_count.py
stacey_run.py		stacey_run.py
test.py		test.py