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COVID-19 simulations

This is the basic implementation of a simple MESA simulation model for COVID-19 based in Dr Petronio Silva's model described in this article and implemented in this repository.

The model is under covid19_sir/. A Dockerfile is provided to ease the configuration of the required environment. To build the docker image:

$ ./build-image.sh

Once the image is built, start a container:

$ ./run-container.sh

Then inside the container:

$ cd covid19_sir/
$ python3 simple-simulation.py

The output is a bunch of scenario*.png and scenario*.csv files. A pair for each simulation scenario.

Scenarios can be edited/added/deleted in simple-simulation.py.

Optionally you can run the simulation from a Jupyter Notebook:

./start-notebook.sh

Then open the indicated URL in a browser on the host machine.

Testing

To run unit tests on this repository, simply cd to covid19_sir (or the desired subdirectory) and run python3 -m pytest.

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