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container.yaml
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container.yaml
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docker: ghcr.io/autamus/bedops
url: https://github.com/orgs/autamus/packages/container/package/bedops
maintainer: '@vsoch'
description: BEDOPS is an open-source command-line toolkit that performs highly efficient
and scalable Boolean and other set operations, statistical calculations, archiving,
conversion and other management of genomic data of arbitrary scale.
latest:
2.4.40: sha256:dfbbc43709800d31037cd9c861627d413a242a0cf4220e80e404f576cbe7e849
tags:
2.4.39: sha256:dfeab119cd7ea1b59a42146a76c66334f1a0cb9aed4cd2932a1e10f1ae7fdb8d
2.4.40: sha256:dfbbc43709800d31037cd9c861627d413a242a0cf4220e80e404f576cbe7e849
latest: sha256:dfbbc43709800d31037cd9c861627d413a242a0cf4220e80e404f576cbe7e849
aliases:
bam2bed: /opt/view/bin/bam2bed
bam2bed_gnuParallel: /opt/view/bin/bam2bed_gnuParallel
bam2bed_sge: /opt/view/bin/bam2bed_sge
bam2bed_slurm: /opt/view/bin/bam2bed_slurm
bam2starch: /opt/view/bin/bam2starch
bam2starch_gnuParallel: /opt/view/bin/bam2starch_gnuParallel
bam2starch_sge: /opt/view/bin/bam2starch_sge
bam2starch_slurm: /opt/view/bin/bam2starch_slurm
bedextract: /opt/view/bin/bedextract
bedmap: /opt/view/bin/bedmap
bedops: /opt/view/bin/bedops
closest-features: /opt/view/bin/closest-features
convert2bed: /opt/view/bin/convert2bed
gff2bed: /opt/view/bin/gff2bed
gff2starch: /opt/view/bin/gff2starch
gtf2bed: /opt/view/bin/gtf2bed
gtf2starch: /opt/view/bin/gtf2starch
gvf2bed: /opt/view/bin/gvf2bed
gvf2starch: /opt/view/bin/gvf2starch
psl2bed: /opt/view/bin/psl2bed
psl2starch: /opt/view/bin/psl2starch
rmsk2bed: /opt/view/bin/rmsk2bed
rmsk2starch: /opt/view/bin/rmsk2starch
sam2bed: /opt/view/bin/sam2bed
sam2starch: /opt/view/bin/sam2starch
sort-bed: /opt/view/bin/sort-bed
starch: /opt/view/bin/starch
starch-diff: /opt/view/bin/starch-diff
starchcat: /opt/view/bin/starchcat
starchcluster_gnuParallel: /opt/view/bin/starchcluster_gnuParallel
starchcluster_sge: /opt/view/bin/starchcluster_sge
starchcluster_slurm: /opt/view/bin/starchcluster_slurm
starchstrip: /opt/view/bin/starchstrip
unstarch: /opt/view/bin/unstarch
update-sort-bed-migrate-candidates: /opt/view/bin/update-sort-bed-migrate-candidates
update-sort-bed-slurm: /opt/view/bin/update-sort-bed-slurm
update-sort-bed-starch-slurm: /opt/view/bin/update-sort-bed-starch-slurm
vcf2bed: /opt/view/bin/vcf2bed
vcf2starch: /opt/view/bin/vcf2starch
wig2bed: /opt/view/bin/wig2bed
wig2starch: /opt/view/bin/wig2starch