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12 lines (11 sloc) 164 Bytes
H VN:Z:1.0
S 1 CGATGCAA
S 2 TGCAAAGTAC
S 3 TGCAACGTATAGACTTGTCAC RC:i:4
S 4 GCATATA
S 5 CGATGATA
S 6 ATGA
L 1 + 2 + 5M
L 3 + 2 + 0M
L 3 + 4 - 1M1D2M1S
L 4 - 5 + 0M