sjspielman
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3,513 contributions in the last year
Contribution activity
March 2023
Created 1 repository
Created a pull request in AlexsLemonade/training-modules that received 21 comments
Opened 20 other pull requests in 3 repositories
AlexsLemonade/OpenPBTA-analysis
1
open
12
merged
- Zenodo CSVs for oncoprint plots
- Zenodo export for S3a
- Figure S7 Zenodo CSVs
- Zenodo CSVs: S2H-I and S6A-D
- Zenodo CSVs: Figure S3C,D,E and S5
- Zenodo CSV: Figure 5 and part of S6
- Figure 4 Zenodo CSVs
- Zenodo CSVs: Figure 3 and Figure S4
- First set of zenodo CSVs
- Prepare for Zenodo tables: Update tables organization
- Fix polya/stranded barplot
- Fig S7 UMAP panel with both polyA and stranded
- Figure S7: Add new panels A and C
AlexsLemonade/training-modules
5
merged
AlexsLemonade/2023-march-training
2
merged
Reviewed 27 pull requests in 7 repositories
AlexsLemonade/OpenPBTA-analysis
8 pull requests
AlexsLemonade/OpenPBTA-manuscript
7 pull requests
AlexsLemonade/training-modules
6 pull requests
AlexsLemonade/sc-data-integration
2 pull requests
AlexsLemonade/scpca-downstream-analyses
2 pull requests
AlexsLemonade/2023-march-training
1 pull request
AlexsLemonade/scpca-nf
1 pull request
Created an issue in AlexsLemonade/OpenPBTA-manuscript that received 3 comments
Low-grade astrocytic tumors wording
There are a couple places we still have this term and need to update to LGG: OpenPBTA-manuscript/content/06.methods.md Line 314 in cfb3a75
3
comments
Opened 21 other issues in 3 repositories
AlexsLemonade/training-modules
13
open
2
closed
- Add scIntro roadmaps: clustering
- Add scIntro roadmaps: preprocessing
- Nice to have: Cheatsheets reorganized by topic
- Material swap: Update cheatsheets
- Material swap: Introduction slide updates
- Material Swap: Slide updates
- Material swap: Setup content
- Material Swap: Update data in S3 and server
- Material swap: Switch training notebooks
- Slide screen shot updates
-
Anonymous function syntax in
05-clustering_markers_scRNAnotebook - scIntro Refresh for May 2023
- SingleR into the cheatsheet
- Consider new framework for cheatsheet PDF conversion
- Add Patel 1B to diagrams
AlexsLemonade/OpenPBTA-analysis
4
closed
1
open
AlexsLemonade/scpca-nf
1
open
26
contributions
in private repositories
Mar 1 – Mar 23