This repository accompanies the paper Comprehensive, structurally-informed alignment and phylogeny of vertebrate biogenic amine receptors, by Spielman SJ, Kumar K, and Wilke CO. Contact Stephanie at firstname.lastname@example.org with any questions.
ML partitioned-phylogeny created with structurally-informed masked alignment, in newick format with branch lengths and bootstrap support included.
Description of all sequences in final structurally-informed alignment. This is a tab-delimited file containing the ProteinID/NucleotideID, gene, and taxonomy.
Alignments and phylogenies for each primary biogenic amine receptors subclade. Created from the masked structurally-informed MSA and its corresponding partitioned ML phylogeny.
Description of Contents
- Contains data (incl. sequences, alignments, phylogenies, sequence descriptions) used and generated during analysis pipeline. See README within for details.
- Contains all code used during analysis pipeline. See README within for details.
- Contains manuscript, figures, tables.