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Problematic FLIM file #5

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grislis opened this issue Dec 5, 2013 · 1 comment

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@grislis
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commented Dec 5, 2013

Loading /Users/aivar/Desktop/ics/chris/Ils1 500 60slice.ics

Gives

Exception in thread "main" java.lang.ArrayIndexOutOfBoundsException: 0

at loci.slim.heuristics.FitterEstimator.findMax(FitterEstimator.java:178) at loci.slim.heuristics.FitterEstimator.getEstimateStartIndex(FitterEstimator.java:72) at loci.curvefitter.SLIMCurveFitter.fitData(SLIMCurveFitter.java:256)

Needs to be investigated.

@ghost ghost assigned grislis Dec 5, 2013
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commented Dec 28, 2013

Getting the same issue in IJ2 version:

java.lang.ArrayIndexOutOfBoundsException: 0
at loci.slim2.heuristics.DefaultFitterEstimator.findMax(DefaultFitterEstimator.java:172)

This seems like an oddball file: No lifetime dimension is detected, so IJ2 version prompts to select a dimension, CHANNEL is the only choice. Still the image exhibits a regular pattern so it looks like it loads wrong:

60slice

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