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Hi there, I'm Kamil 👋

I work as a biomedical researcher at Mass General Brigham, where I focus on statistical analysis for projects that involve millions of cells from hundreds of patient samples. My expertise is in the field of genomics and immunology, and more specifically in the analysis of single-cell transcriptomics data. In other words, I study data that tells us what cells are doing at the molecular level, and I compare the cells from different people to find out what might be happening in the context of diseases like rheumatoid arthritis, immunotherapy-related colitis, and COVID-19.

I am interested to hear about 100% remote work opportunities, so please feel free to get in touch.

I believe that it is important to make data easily accessible to all of my current and future collaborators. This motivates me to create bespoke websites that enable visitors to browse the datasets that I analyze. My favorite way to make these kinds of websites is with vanilla client-side Javascript.


  1. ggrepel Public

    📍 Repel overlapping text labels away from each other.

    R 1k 90

  2. harmonypy Public

    🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.

    Python 84 14

  3. cellguide Public

    🧭 Navigate single-cell RNA-seq datasets in your web browser.

    JavaScript 17 3

  4. snakefiles Public

    🐍 Snakefiles for common RNA-seq data analysis workflows.

    Python 78 34

  5. snpsea Public

    📊 Identify cell types and pathways affected by genetic risk loci.

    C++ 29 8

  6. tftargets Public

    🎯 Human transcription factor target genes.

    R 77 19

53 contributions in the last year

Oct Nov Dec Jan Feb Mar Apr May Jun Jul Aug Sep Mon Wed Fri
Activity overview
Contributed to slowkow/awesome-vdj, slowkow/, slowkow/slowkow and 22 other repositories

Contribution activity

September 2022

Created 4 commits in 1 repository
Created 1 repository

Created an issue in saezlab/.github that received 1 comment

Broken links

Some of your links are broken: python -m pip install linkcheckmd linkcheckMarkdown ('', '', 4…

1 comment
Opened 4 other issues in 4 repositories

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