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snpbook

A proof of concept for computing linkage disequilibrium (LD) between single nucleotide polymorphisms (SNPs) and visualizing it with d3.

Uses tabix running on the iobio server to pull genotype data from a VCF file hosted on the BEAGLE website.

All done in the web browser with Javascript!

Try it: https://slowkow.github.io/snpbook/

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📙 Explore 1000 Genomes variant data with JavaScript.

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