Skip to content

slucey/RpathDev

Public
Switch branches/tags

Name already in use

A tag already exists with the provided branch name. Many Git commands accept both tag and branch names, so creating this branch may cause unexpected behavior. Are you sure you want to create this branch?
Code

Latest commit

 

Git stats

Files

Permalink
Failed to load latest commit information.
Type
Name
Latest commit message
Commit time
 
 
 
 
 
 
 
 
 
 
 
 

Rpath

Note: This repository is no longer updated - please visit NOAA-EDAB/Rpath for the latest updates

This is the repository for Rpath - the R version of the Ecopath with Ecosim model

The initial files are the code sent by Kerim to Sean on March 31, 2014 (ecopath_sim_r_v0_04_toSean_31_03_14.zip) Files have been renamed to drop the version number and take advantage of this VCS

Beta version notes: v0.0.0.917 - Fixed bug with adjust.fishing so one value can be applied over a range of sim.years

v0.0.0.916 - Fixed bug with original scenario file and stanza files being overwritten by C code.

======= v0.0.0.915 - Fixed bug with egg stanza calculation where the Wmat matrix was indexed wrong inthe calculation.

v0.0.0.9014 - Updated adjustment functions. Renamed parameter "year" to "sim.year". Removed the "gear" parameter from adjust fishing as it is a group and there is never a group/fleet combo that needs to be specified.

v0.0.0.9013 - Fixed indexing issue with rsim.step and issue with rsim.run modifying initial rsim.scenario data table.

v0.0.0.911 - ecosim scenario objects now parameterized with a vector of years for labeling, e.g. years=c(1970,2017), not a single number of years.

  • rsim.run will run for the years specified (e.g. years=c(2013,2014) will save outputs in those two year slots). Haven't carried this change over to the multistep function.
  • labeling in the fishing/forcing matrices (columns labelled by species, rows labeled by years (for annual matrices, no labeling for monthly rows)
  • the addition of force_bybio (biomass forced to stay at input value)

v0.0.0.906 - Added gear specific catch tracking and new extract.node function.

v0.0.0.905 - Caught up with Kerim's edits.

v0.0.0.904 - Data.table package updated and created a few bugs that have been solved.

v0.0.0.903 - Fixed issue with consumption calculations due to the addition of diet import in the diet matrix.

Did not keep good track of notes prior to version 0.0.0.9003 - My Bad

About

This repo is no longer updated - please visit NOAA-EDAB/Rpath for latest

Resources

License

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Contributors 4

  •  
  •  
  •  
  •