[Header] GSGT Version 2.0.4 Processing Date 2/24/2023 12:17 PM Content GDA-8v1-0_A1.bpm Num SNPs 90 Total SNPs 90 Num Samples 3 Total Samples 3 [Data] snp sample X Y BAlleleFreq LogRRatio rawX rawY quality AlleleA AlleleB 1:10001102-G-T sample1 0.681 0.008 0.0000 -0.0076 4950 83 0.4906 A A 1:100011159-T-G sample1 0.041 0.887 1.0000 -0.0997 470 2562 0.8048 B B 1:10002775-GA sample1 0.052 1.256 0.9972 0.1379 526 3595 0.4782 B B 1:100122796-C-T sample1 1.853 0.019 0.0000 0.1056 13299 164 0.7615 A A 1:100152282-CT sample1 0.089 1.269 0.9990 -0.0355 794 3633 0.3717 B B 1:100154376-GA sample1 0.037 0.724 1.0000 -0.0775 375 2089 0.4928 B B 1:100154844-CA sample1 0.119 1.433 1.0000 0.0015 1030 4098 0.3616 B B 1:100155035-AC sample1 1.378 0.074 0.0044 -0.0660 10214 294 0.3833 A A 1:100155084-CT sample1 0.072 1.596 1.0000 0.0913 697 4558 0.3868 B B 1:100182985-CA sample1 0.037 1.432 1.0000 -0.0136 428 4091 0.3992 B B 1:100183042-AG sample1 1.170 0.034 0.0000 -0.1164 8676 175 0.4491 A A 1:100185177-GT sample1 0.043 1.182 1.0000 0.0408 453 3384 0.4637 B B 1:100203689-GA sample1 0.064 1.016 1.0000 0.0251 596 2914 0.4673 B B 1:100206467-TG sample1 1.666 0.051 0.0000 0.1067 12340 240 0.7479 A A 1:100212854-AC sample1 1.179 0.025 0.0000 0.1677 8746 149 0.5191 A A 1:100316615-CAG-C sample1 0.028 0.845 1.0000 0.0410 324 2568 0.4748 B B 1:10032154-AC sample1 1.306 0.023 0.0000 0.0334 9683 147 0.4275 A A 1:10032156-G-A sample1 0.029 1.194 1.0000 0.1482 366 3621 0.4987 B B 1:100327217-TC sample1 1.101 0.025 0.0000 0.2326 8169 146 0.8902 A A 1:100336041-TAGAC-T sample1 0.044 1.103 1.0000 0.0582 454 3162 0.4995 B B 1:100336354-TG sample1 0.316 0.030 0.0001 -0.1673 2378 135 0.4747 A A 1:100340360-CT sample1 0.054 0.970 1.0000 0.0131 520 2785 0.4808 B B 1:100340950-C-T sample1 0.035 1.175 1.0000 0.0996 409 3564 0.4930 B B 1:100343197-GT sample1 0.040 0.723 1.0000 -0.1074 399 2085 0.4764 B B 1:100343253-CT sample1 0.138 1.235 1.0000 0.0549 1159 3538 0.3450 B B 1:100346885-G-A sample1 0.034 0.877 1.0000 -0.0030 375 2665 0.4726 B B 1:100347131-CT sample1 0.053 1.096 0.9982 0.0442 516 3141 0.4987 B B 1:100347158-AG sample1 1.530 0.109 0.0000 0.1299 11341 398 0.3482 A A 1:100350136-AG sample1 0.887 0.025 0.0000 -0.1613 6594 139 0.5110 A A 1:100350153-GA sample1 0.029 0.802 1.0000 -0.0984 320 2308 0.4888 B B 1:100350168-C-T sample1 0.026 0.969 1.0000 -0.0901 322 2942 0.5002 B B 1:100356893-GA sample1 0.048 1.316 1.0000 0.1015 497 3763 0.4067 B B 1:100361919-AG sample1 1.729 0.031 0.0000 0.1246 12797 184 0.4097 A A 1:100366266-CT sample1 0.021 1.103 1.0000 -0.0021 281 3159 0.5093 B B 1:100368332-C-T sample1 0.057 1.396 1.0000 0.1477 591 4235 0.3964 B B 1:100368347-GA sample1 0.071 1.320 1.0000 0.1061 664 3775 0.4017 B B 1:100379098-GT-G sample1 0.672 0.071 0.0275 -0.1070 5078 259 0.4832 A A 1:100381968-AG sample1 1.246 0.014 0.0000 0.0660 9235 119 0.5033 A A 1:100382048-G-C sample1 0.036 1.195 1.0000 0.1042 175 3480 0.4991 B B 1:100382143-A-G sample1 1.337 0.003 0.0000 0.1303 10053 88 0.5060 A A 1:100382260-CT-C sample1 1.151 0.032 0.0000 0.0411 8660 166 0.5137 A A 1:10042370-G-T sample1 0.036 0.846 1.0000 -0.1294 383 2570 0.4904 B B 1:10042376-C-G sample1 0.017 0.791 1.0000 -0.2018 275 6043 0.5135 B B 1:10042443-CT sample1 0.051 0.701 0.9922 -0.2724 473 2024 0.4734 B B 1:10042629-G-T sample1 0.585 1.008 0.9775 0.0113 4511 3086 0.1865 B B 1:10042736-A-G sample1 1.026 0.028 0.0000 -0.1487 7725 148 0.5152 A A 1:100436133-AG sample1 0.770 0.037 0.0000 -0.3300 5727 169 0.6265 A A 1:10050243-T-C sample1 0.133 1.545 0.9939 0.0394 1186 4442 0.7107 B B 1:100503800-GGAA-G sample1 0.071 1.209 0.9954 0.2552 656 3463 0.5002 B B 1:100524265-GA sample1 0.063 0.866 1.0000 -0.0557 577 2492 0.4347 B B 1:100536126-C-T sample1 1.534 0.021 0.0002 0.2448 11027 155 0.8076 A A 1:100542719-AT sample1 1.052 0.003 0.0000 0.0707 3149 132 0.5279 A A 1:100542815-GA sample1 0.063 1.300 1.0000 0.1501 608 3719 0.4288 B B 1:100550958-GA sample1 0.037 1.384 1.0000 0.1503 421 3955 0.4005 B B 1:100551124-CT sample1 0.051 1.076 1.0000 -0.1201 499 3086 0.8653 B B 1:100571325-CT sample1 0.028 1.259 1.0000 0.0607 349 3602 0.4273 B B 1:100584683-TC sample1 0.320 0.022 0.0000 -0.4477 2411 111 0.4874 A A 1:100591478-CT sample1 0.041 1.246 1.0000 0.0930 438 3566 0.8792 B B 1:100605967-TTGAATTCTACAC-T sample1 0.035 1.466 1.0000 0.1081 414 4189 0.3868 B B 1:100606490-AG sample1 1.039 0.020 0.0000 0.0988 7709 130 0.5073 A A 1:100613705-CA sample1 0.044 1.320 1.0000 0.1362 466 3774 0.4412 B B 1:100613734-GAGT-G sample1 1.454 0.051 0.0000 0.0034 10776 231 0.3868 A A 1:100614943-CT sample1 0.038 1.000 1.0000 0.1660 399 2868 0.4934 B B 1:100617991-AG sample1 1.049 0.080 0.0000 -0.1402 7786 301 0.4257 A A 1:100618006-CTCT-C sample1 0.987 0.040 0.0035 0.0090 7326 185 0.9371 A A 1:100620657-GT sample1 0.038 1.146 1.0000 0.0831 409 3283 0.9258 B B 1:100621741-CT sample1 0.059 1.434 1.0000 0.2078 585 4098 0.4025 B B 1:100623881-TG sample1 1.206 0.031 0.0000 -0.0183 8944 168 0.4820 A A 1:100626078-TC sample1 1.297 0.025 0.0000 0.1344 9614 153 0.5046 A A 1:100635211-A-C sample1 0.028 0.902 1.0000 -0.0773 376 2603 0.8815 B B 1:100661831-TC sample1 1.401 0.030 0.0000 0.0482 10383 171 0.4136 A A 1:100661951-CT sample1 0.056 1.238 1.0000 0.1492 552 3544 0.4802 B B 1:100678281-G-A sample1 1.109 0.015 0.0000 -0.1516 8000 122 0.8834 A A 1:100681578-GT sample1 0.043 1.202 1.0000 0.0653 456 3442 0.4598 B B 1:100681632-GA sample1 0.065 1.093 1.0000 -0.1423 608 3133 0.3700 B B 1:10068303-CT sample1 0.123 1.458 1.0000 0.2807 1058 4168 0.3774 B B 1:100684201-CT sample1 0.011 1.208 1.0000 0.0444 217 3457 0.4614 B B 1:1007274-GA sample1 0.025 0.355 1.0000 -0.1276 259 1044 0.4519 B B 1:1007306-GA sample1 0.039 0.259 1.0000 -0.4383 352 772 0.3803 B B 1:100732126-GA sample1 0.018 0.767 1.0000 0.0711 239 2210 0.4752 B B 1:100733769-GA sample1 0.003 0.312 1.0000 -0.7071 97 922 0.4561 B B 1:100736135-GA sample1 0.065 1.447 1.0000 0.1865 634 4135 0.3928 B B 1:100738962-AG sample1 1.043 0.016 0.0000 0.2150 7737 120 0.8440 A A 1:100742839-CTGTT-C sample1 1.189 0.017 0.0000 -0.1686 8820 126 0.4185 A A 1:100742858-CT sample1 0.104 1.342 1.0000 -0.0046 911 3839 0.3616 B B 1:1007496-GT sample1 0.051 0.507 1.0000 -0.0379 461 1474 0.4111 B B 1:100756990-AG sample1 0.806 0.030 0.0000 -0.3089 5995 150 0.5118 A A 1:1007636-GT sample1 0.035 0.151 1.0000 -0.3536 315 467 0.2426 B B 1:1007673-CT sample1 0.026 0.160 1.0000 -0.7300 253 491 0.3567 B B 1:100818524-CT sample1 0.079 1.187 1.0000 0.0918 717 3401 0.4543 B B