[Header] GSGT Version 2.0.4 Processing Date 2/24/2023 12:17 PM Content GDA-8v1-0_A1.bpm Num SNPs 90 Total SNPs 90 Num Samples 3 Total Samples 3 [Data] snp sample X Y BAlleleFreq LogRRatio rawX rawY quality AlleleA AlleleB 1:10001102-G-T sample3 0.682 0.035 0.0066 0.0333 4986 160 0.4906 A A 1:100011159-T-G sample3 0.066 0.887 0.9829 -0.0633 633 2512 0.8048 B B 1:10002775-GA sample3 0.029 1.174 1.0000 0.0266 370 3419 0.4782 B B 1:100122796-C-T sample3 1.843 0.057 0.0106 0.1145 13339 275 0.7615 A A 1:100152282-CT sample3 0.081 1.206 1.0000 -0.1112 772 3514 0.3717 B B 1:100154376-GA sample3 0.010 0.750 1.0000 -0.0654 178 2187 0.4928 B B 1:100154844-CA sample3 0.165 1.290 0.9713 -0.1232 1426 3764 0.3616 B B 1:100155035-AC sample3 1.706 0.067 0.0000 0.2293 13140 309 0.3833 A A 1:100155084-CT sample3 0.062 1.510 1.0000 0.0081 659 4394 0.3868 B B 1:100182985-CA sample3 0.111 1.322 0.9706 -0.0885 1017 3852 0.3992 B B 1:100183042-AG sample3 1.539 0.059 0.0048 0.2882 11858 276 0.4491 A A 1:100185177-GT sample3 0.072 1.147 0.9933 0.0187 698 3343 0.4637 B B 1:100203689-GA sample3 0.105 0.972 0.9768 -0.0021 934 2837 0.4673 B B 1:100206467-TG sample3 1.515 0.063 0.0050 -0.0184 11671 288 0.7479 A A 1:100212854-AC sample3 1.165 0.049 0.0109 0.1701 8980 225 0.5191 A A 1:100316615-CAG-C sample3 0.044 0.726 1.0000 -0.1519 439 2164 0.4748 B B 1:10032154-AC sample3 1.150 0.048 0.0000 -0.1284 8862 221 0.4275 A A 1:10032156-G-A sample3 0.050 1.102 1.0000 0.0508 526 3288 0.4987 B B 1:100327217-TC sample3 0.990 0.004 0.0000 0.0608 7633 85 0.8902 A A 1:100336041-TAGAC-T sample3 0.080 1.043 0.9853 0.0072 750 3041 0.4995 B B 1:100336354-TG sample3 0.288 0.035 0.0170 -0.2740 2247 130 0.4747 A A 1:100340360-CT sample3 0.090 1.048 0.9819 0.1495 823 3056 0.4808 B B 1:100340950-C-T sample3 0.065 1.016 0.9929 -0.0827 630 3030 0.4930 B B 1:100343197-GT sample3 0.054 0.785 0.9972 0.0245 524 2292 0.4764 B B 1:100343253-CT sample3 0.163 1.112 0.9765 -0.0743 1393 3247 0.3450 B B 1:100346885-G-A sample3 0.040 0.903 1.0000 0.0429 426 2691 0.4726 B B 1:100347131-CT sample3 0.061 1.108 0.9938 0.0662 605 3230 0.4987 B B 1:100347158-AG sample3 1.557 0.146 0.0000 0.1741 12005 530 0.3482 A A 1:100350136-AG sample3 0.997 0.042 0.0017 0.0193 7688 193 0.5110 A A 1:100350153-GA sample3 0.026 0.813 1.0000 -0.0817 313 2371 0.4888 B B 1:100350168-C-T sample3 0.059 1.040 0.9938 0.0371 586 3102 0.5002 B B 1:100356893-GA sample3 0.112 1.254 0.9758 0.0717 1013 3655 0.4067 B B 1:100361919-AG sample3 1.632 0.049 0.0045 0.0526 12565 253 0.4097 A A 1:100366266-CT sample3 0.035 1.104 1.0000 0.0113 410 3216 0.5093 B B 1:100368332-C-T sample3 0.045 1.218 1.0000 -0.0522 502 3634 0.3964 B B 1:100368347-GA sample3 0.093 1.204 0.9855 -0.0094 860 3508 0.4017 B B 1:100379098-GT-G sample3 0.822 0.059 0.0051 0.1540 6319 222 0.4832 A A 1:100381968-AG sample3 1.170 0.044 0.0051 0.0010 9017 212 0.5033 A A 1:100382048-G-C sample3 0.029 1.131 1.0000 0.0209 154 3279 0.4991 B B 1:100382143-A-G sample3 1.207 0.024 0.0000 -0.0009 9257 142 0.5060 A A 1:100382260-CT-C sample3 1.111 0.042 0.0032 -0.0001 8527 190 0.5137 A A 1:10042370-G-T sample3 0.064 0.882 0.9856 -0.0412 614 2631 0.4904 B B 1:10042376-C-G sample3 0.026 0.864 1.0000 -0.0658 340 6736 0.5135 B B 1:10042443-CT sample3 0.052 0.790 0.9964 -0.1050 509 2307 0.4734 B B 1:10042629-G-T sample3 0.665 1.055 0.9428 0.0871 5221 3189 0.1865 B B 1:10042736-A-G sample3 0.937 0.048 0.0123 -0.2584 7193 195 0.5152 A A 1:100436133-AG sample3 0.928 0.046 0.0000 -0.0576 7164 201 0.6265 A A 1:10050243-T-C sample3 0.153 1.589 0.9864 0.0874 1326 4478 0.7107 B B 1:100503800-GGAA-G sample3 0.042 1.107 1.0000 0.1109 462 3226 0.5002 B B 1:100524265-GA sample3 0.077 0.946 1.0000 0.0778 714 2759 0.4347 B B 1:100536126-C-T sample3 1.371 0.017 0.0000 0.0813 9941 142 0.8076 A A 1:100542719-AT sample3 0.976 0.012 0.0034 -0.0267 2879 165 0.5279 A A 1:100542815-GA sample3 0.069 1.310 1.0000 0.1650 693 3816 0.4288 B B 1:100550958-GA sample3 0.061 1.251 1.0000 0.0212 623 3642 0.4005 B B 1:100551124-CT sample3 0.079 1.017 0.9867 -0.1745 739 2965 0.8653 B B 1:100571325-CT sample3 0.078 1.201 0.9884 0.0259 745 3500 0.4273 B B 1:100584683-TC sample3 0.354 0.029 0.0000 -0.2920 2747 116 0.4874 A A 1:100591478-CT sample3 0.064 1.195 0.9943 0.0500 638 3481 0.8792 B B 1:100605967-TTGAATTCTACAC-T sample3 0.094 1.358 0.9884 0.0299 886 3956 0.3868 B B 1:100606490-AG sample3 1.217 0.000 0.0000 0.3080 9372 65 0.5073 A A 1:100613705-CA sample3 0.057 1.220 0.9937 0.0338 585 3554 0.4412 B B 1:100613734-GAGT-G sample3 1.461 0.080 0.0018 0.0284 11260 334 0.3868 A A 1:100614943-CT sample3 0.071 0.957 0.9832 0.1370 673 2792 0.4934 B B 1:100617991-AG sample3 1.249 0.117 0.0052 0.1271 9635 427 0.4257 A A 1:100618006-CTCT-C sample3 0.979 0.043 0.0054 0.0006 7551 195 0.9371 A A 1:100620657-GT sample3 0.054 1.060 0.9966 -0.0120 552 3089 0.9258 B B 1:100621741-CT sample3 0.082 1.332 0.9942 0.1176 795 3881 0.4025 B B 1:100623881-TG sample3 1.132 0.043 0.0059 -0.0987 8724 206 0.4820 A A 1:100626078-TC sample3 1.195 0.029 0.0000 0.0208 9207 169 0.5046 A A 1:100635211-A-C sample3 0.066 0.893 0.9721 -0.0469 635 2528 0.8815 B B 1:100661831-TC sample3 1.309 0.051 0.0047 -0.0339 10085 240 0.4136 A A 1:100661951-CT sample3 0.059 1.246 1.0000 0.1596 607 3628 0.4802 B B 1:100678281-G-A sample3 1.163 0.024 0.0000 -0.0755 8450 152 0.8834 A A 1:100681578-GT sample3 0.077 1.162 0.9872 0.0396 738 3385 0.4598 B B 1:100681632-GA sample3 0.125 1.059 0.9815 -0.1473 1095 3090 0.3700 B B 1:10068303-CT sample3 0.167 1.246 0.9669 0.0885 1439 3636 0.3774 B B 1:100684201-CT sample3 0.056 1.165 0.9972 0.0248 578 3395 0.4614 B B 1:1007274-GA sample3 0.045 0.380 0.9962 0.0273 414 1116 0.4519 B B 1:1007306-GA sample3 0.075 0.286 0.9339 -0.1706 636 846 0.3803 B B 1:100732126-GA sample3 0.024 0.763 1.0000 0.0716 289 2227 0.4752 B B 1:100733769-GA sample3 0.039 0.478 1.0000 -0.0131 375 1399 0.4561 B B 1:100736135-GA sample3 0.099 1.299 0.9808 0.0534 919 3784 0.3928 B B 1:100738962-AG sample3 0.967 0.020 0.0000 0.1122 7456 130 0.8440 A A 1:100742839-CTGTT-C sample3 1.249 0.037 0.0000 -0.0837 9625 194 0.4185 A A 1:100742858-CT sample3 0.135 1.251 0.9864 -0.0864 1190 3648 0.3616 B B 1:1007496-GT sample3 0.076 0.586 1.0000 0.2022 672 1716 0.4111 B B 1:100756990-AG sample3 0.817 0.034 0.0012 -0.2843 6309 161 0.5118 A A 1:1007636-GT sample3 0.058 0.133 0.9389 -0.2905 490 401 0.2426 B B 1:1007673-CT sample3 0.028 0.223 1.0000 -0.2947 268 659 0.3567 B B 1:100818524-CT sample3 0.107 1.164 0.9847 0.0826 965 3395 0.4543 B B