Navigation Menu

Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

293 #1515

Merged
merged 41 commits into from Nov 9, 2018
Merged

293 #1515

merged 41 commits into from Nov 9, 2018

Conversation

rmillikin
Copy link
Member

No description provided.

acesnik and others added 30 commits August 28, 2018 12:26
* hyphens

* test changes to score original ions instead of complementary

* Faster serialize/deserialize

* Revert "Faster serialize/deserialize"

This reverts commit 751b427.

* Revert "Faster serialize/deserialize"

This reverts commit 751b427.

* Fix modification bug in nonspecific

* Remove comp ions in multi-termini scoring for SNES
* added twitter and slack follows to menu

* mzlib update

* mzlib update to gui
* Fix Gui

* Fixes to fix the bugs from the last fixes

* Clean

* string set default protease to trypsin. prevents default changes if protease list is modified.

* refactor default trypsin in GUI
* indexes output folder

* rob edits
* start on "add custom mod" button

* more error checking

* cleanup

* tooltips etc

* QValueParam

* Changes to file writing

* Small Changes

* Smaller Changes

* Update PostSearchAnalysisTask.cs

* Update TestPsm.cs

* Update MetaMorpheusTask.cs

* qval

* Add Custom Mod Button

* fix

* rob edits

* rob edit 2

* rob edits
* Fix Gui

* Fixes to fix the bugs from the last fixes

* Clean

* string set default protease to trypsin. prevents default changes if protease list is modified.

* refactor default trypsin in GUI

* Fix SNES to allow notches
* fix custom mass diff acceptor parsing crash

* change unit test

* fix public/private method stuff
* Fix Gui

* Fixes to fix the bugs from the last fixes

* Clean

* string set default protease to trypsin. prevents default changes if protease list is modified.

* refactor default trypsin in GUI

* Fix SNES to allow notches

* New mass diff acceptor method for SNES to reverse calculate the notches given the observed precursor.

* Update test rename from failed build. Update test to missed mono

* Simplify Modern massdiffacceptor
* my fake test

* I added nothing.

* Add youtube & wiki link.

* youtube and wiki link update

* startup message

* change path. installer works after change

* fixed startup message

* changed text

* Window close pop up

* change param name

* latest edits

* Revert "latest edits"

This reverts commit d676f5e.

* output indexes to folder

* Revert "output indexes to folder"

This reverts commit f41ecd1.

* edit message

* added don't ask again button to pop up

* fix method naming style

* add debug ver

* popup edits

* remove unneccessary usings

* mod search box

* small format edits

* initial changes

* search mod boxes edits

* simplified code

* rob edits

* rob edits 2

* remove some using statements
acesnik and others added 11 commits November 2, 2018 17:36
* mods overhaul

* installer stuff

* few more edits

* added a couple mods, edits

* couple more edits
Generate variant proteins for digestion in classic search
…1514)

* re-add peptidomics protease, fix some issues with custom mod window

* gptmd search mods window stuff
@rmillikin rmillikin temporarily deployed to github-pages November 9, 2018 20:32 Inactive
@rmillikin rmillikin merged commit d2b96e4 into release Nov 9, 2018
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

None yet

5 participants