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293 #1515
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* hyphens * test changes to score original ions instead of complementary * Faster serialize/deserialize * Revert "Faster serialize/deserialize" This reverts commit 751b427. * Revert "Faster serialize/deserialize" This reverts commit 751b427. * Fix modification bug in nonspecific * Remove comp ions in multi-termini scoring for SNES
* added twitter and slack follows to menu * mzlib update * mzlib update to gui
* Fix Gui * Fixes to fix the bugs from the last fixes * Clean * string set default protease to trypsin. prevents default changes if protease list is modified. * refactor default trypsin in GUI
* indexes output folder * rob edits
* start on "add custom mod" button * more error checking * cleanup * tooltips etc * QValueParam * Changes to file writing * Small Changes * Smaller Changes * Update PostSearchAnalysisTask.cs * Update TestPsm.cs * Update MetaMorpheusTask.cs * qval * Add Custom Mod Button * fix * rob edits * rob edit 2 * rob edits
* Fix Gui * Fixes to fix the bugs from the last fixes * Clean * string set default protease to trypsin. prevents default changes if protease list is modified. * refactor default trypsin in GUI * Fix SNES to allow notches
* fix custom mass diff acceptor parsing crash * change unit test * fix public/private method stuff
* Fix Gui * Fixes to fix the bugs from the last fixes * Clean * string set default protease to trypsin. prevents default changes if protease list is modified. * refactor default trypsin in GUI * Fix SNES to allow notches * New mass diff acceptor method for SNES to reverse calculate the notches given the observed precursor. * Update test rename from failed build. Update test to missed mono * Simplify Modern massdiffacceptor
* my fake test * I added nothing. * Add youtube & wiki link. * youtube and wiki link update * startup message * change path. installer works after change * fixed startup message * changed text * Window close pop up * change param name * latest edits * Revert "latest edits" This reverts commit d676f5e. * output indexes to folder * Revert "output indexes to folder" This reverts commit f41ecd1. * edit message * added don't ask again button to pop up * fix method naming style * add debug ver * popup edits * remove unneccessary usings * mod search box * small format edits * initial changes * search mod boxes edits * simplified code * rob edits * rob edits 2 * remove some using statements
* mods overhaul * installer stuff * few more edits * added a couple mods, edits * couple more edits
Generate variant proteins for digestion in classic search
…1514) * re-add peptidomics protease, fix some issues with custom mod window * gptmd search mods window stuff
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