##FastQC 0.11.7 >>Basic Statistics pass #Measure Value Filename merged_newchr20_het.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5926 Sequences flagged as poor quality 0 Sequence length 137-110539 %GC 45 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 4.62723590955113 3.0 2.0 5.0 2.0 10.0 2 5.2905838677016535 4.0 3.0 6.0 2.0 13.0 3 5.921363482956463 4.0 3.0 6.0 3.0 16.0 4 6.71852851839352 5.0 4.0 7.0 3.0 16.0 5 7.15305433682079 5.0 4.0 8.0 3.0 16.0 6 7.3801889976375294 5.0 4.0 8.0 3.0 16.0 7 7.236415794802565 5.0 4.0 8.0 3.0 16.0 8 7.157779277759028 5.0 4.0 8.0 3.0 16.0 9 7.1522105973675325 5.0 3.0 8.0 3.0 16.0 10-1999 31.439045975006366 34.55427135678392 23.235175879396984 38.68643216080402 15.565829145728642 41.78090452261306 2000-3999 31.774434173490274 34.996 23.3 39.0 15.9995 42.0065 4000-5999 31.72274541285768 34.994 22.9465 39.0 16.0 42.0195 6000-7999 31.737650991677206 34.992 22.8015 39.0 16.0 42.0355 8000-9999 31.5970665282183 34.969 22.125 39.0 16.0 42.019 10000-11999 31.588018961751207 34.9495 22.132 39.0 16.0 42.0285 12000-13999 31.428343606863223 34.8085 21.4235 38.996 15.9955 42.0185 14000-15999 31.22851780280244 34.576 20.0255 38.994 15.9935 42.0255 16000-17999 31.43183597388207 34.8 21.4045 38.997 15.992 42.029 18000-19999 31.799984811294472 34.958 23.235 38.999 15.975 42.1175 20000-21999 31.851757623350935 34.9855 23.289 39.0065 15.981 42.1425 22000-23999 31.85334991048246 34.98 23.369 39.0 15.949 42.1055 24000-25999 31.959003013616293 35.0355 23.789 39.026 15.927 42.178 26000-27999 31.64288260354696 34.819 22.4055 38.9865 15.9115 42.1125 28000-29999 31.306137529793894 34.546 20.5455 38.9425 15.8745 42.0385 30000-31999 30.88798386844123 34.1955 18.22 38.794 15.8945 41.935 32000-33999 30.411486549846884 33.7445 16.3955 38.6105 15.875 41.8075 34000-35999 30.321637500656955 33.6615 16.3875 38.59 15.479 41.7955 36000-37999 30.07160590814687 33.331 16.049 38.507 15.691 41.7245 38000-39999 29.214705004626037 32.261 16.0025 38.179 15.2915 41.458 40000-41999 28.60437371390462 31.337 16.0 37.9915 15.4705 41.2675 42000-43999 27.917210004633542 29.7855 16.0 37.738 15.434 41.1235 44000-45999 27.45069155587386 28.1505 16.0 37.503 15.503 41.0145 46000-47999 26.821131151035814 25.581 16.0 37.171 15.6285 40.8125 48000-49999 25.81787902594087 20.179 16.0 36.4265 15.326 40.3185 50000-51999 26.306627462672076 23.423 16.0 36.6385 14.8005 40.393 52000-53999 25.400057468162196 19.34296875 16.0 35.928125 15.003125 39.96953125 54000-55999 25.749986543379226 NaN NaN NaN NaN NaN 56000-57999 27.156233313929096 NaN NaN NaN NaN NaN 58000-59999 25.631168231891504 NaN NaN NaN NaN NaN 60000-61999 24.789202437725383 NaN NaN NaN NaN NaN 62000-63999 24.664614222095555 NaN NaN NaN NaN NaN 64000-65999 23.443221825396815 NaN NaN NaN NaN NaN 66000-67999 23.48859492913003 NaN NaN NaN NaN NaN 68000-69999 22.889780645161267 NaN NaN NaN NaN NaN 70000-71999 22.561183333333346 NaN NaN NaN NaN NaN 72000-73999 29.527497222222234 NaN NaN NaN NaN NaN 74000-75999 35.2364375 NaN NaN NaN NaN NaN 76000-77999 35.10313928571428 NaN NaN NaN NaN NaN 78000-79999 35.37416666666667 NaN NaN NaN NaN NaN 80000-81999 35.91625 NaN NaN NaN NaN NaN 82000-83999 35.9325 NaN NaN NaN NaN NaN 84000-85999 35.2265 NaN NaN NaN NaN NaN 86000-87999 35.2905 NaN NaN NaN NaN NaN 88000-89999 34.576 NaN NaN NaN NaN NaN 90000-91999 32.74275 NaN NaN NaN NaN NaN 92000-93999 28.621 NaN NaN NaN NaN NaN 94000-95999 32.834 NaN NaN NaN NaN NaN 96000-97999 35.6505 NaN NaN NaN NaN NaN 98000-99999 33.1045 NaN NaN NaN NaN NaN 100000-101999 32.6665 NaN NaN NaN NaN NaN 102000-103999 31.0615 NaN NaN NaN NaN NaN 104000-105999 31.198 NaN NaN NaN NaN NaN 106000-107999 35.8615 NaN NaN NaN NaN NaN 108000-109999 34.1815 NaN NaN NaN NaN NaN 110000-110539 34.16111111111111 NaN NaN NaN NaN NaN >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 4.0 15 10.0 16 503.0 17 33.0 18 27.0 19 26.0 20 35.0 21 35.0 22 42.0 23 51.0 24 61.0 25 102.0 26 101.0 27 132.0 28 163.0 29 200.0 30 281.0 31 302.0 32 383.0 33 542.0 34 819.0 35 1021.0 36 763.0 37 242.0 38 38.0 39 6.0 40 2.0 41 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.851501856226797 19.895376307796152 42.20384745190685 8.049274384070198 2 16.50354370570368 10.54674316571043 66.33479581505232 6.614917313533581 3 34.77894026324671 18.444144448194397 39.14951063111711 7.627404657441781 4 20.755990550118124 13.938575767802902 57.2224097198785 8.083023962200473 5 26.02092473844077 18.309146135673306 44.65069186635167 11.019237259534256 6 23.607829902126223 21.07661154235572 41.47823152210597 13.837327033412084 7 21.09348633142086 21.262234222072223 42.085723928450896 15.558555518056025 8 25.075936550793116 20.40161997975025 35.470806614917315 19.051636854539318 9 21.414107323658456 16.874789065136685 40.246371920350995 21.464731690853863 10-1999 23.171250992271183 26.454206977244976 27.11970920444126 23.254832826042584 2000-3999 22.95784287905448 26.947474982566323 27.13400656048676 22.960675577892438 4000-5999 22.980447315894203 26.914490881384868 27.27071044258888 22.83435136013205 6000-7999 23.11878057535158 26.85100814334418 27.272828011031496 22.757383270272744 8000-9999 22.897242667420393 26.960618016952548 27.332919896066592 22.809219419560467 10000-11999 22.827046013928786 27.091977594277495 27.321069223460327 22.759907168333395 12000-13999 22.96983656128841 26.985780462136727 27.364298031164182 22.680084945410684 14000-15999 23.0434517254647 26.839580209895054 27.326266070504573 22.790701994135677 16000-17999 22.93552166176894 27.177893605692553 27.28922972352312 22.59735500901538 18000-19999 22.992098335797245 26.861408880370192 27.50724449682897 22.639248287003593 20000-21999 22.69200001218005 26.92613364734664 27.90393071987145 22.477935620601862 22000-23999 22.43999342682849 27.247806053247714 28.057793655683405 22.25440686424039 24000-25999 22.617550090850045 27.297355071570102 27.460967367979677 22.62412746960018 26000-27999 22.924552833125887 26.901364990101484 27.442992507636248 22.731089669136384 28000-29999 23.051935878873454 27.0194206124134 27.484573994966354 22.444069513746793 30000-31999 22.466161619417093 27.565561142977113 27.67449591195345 22.293781325652343 32000-33999 23.01328891484277 27.749740880167046 27.48340232421332 21.753567880776863 34000-35999 22.800491305123664 27.36798779812726 27.103709405783903 22.72781149096517 36000-37999 22.69952410523698 26.825878055590735 26.984102765194223 23.490495073978064 38000-39999 22.713346692542824 26.44842725138359 28.03784563445132 22.800380421622265 40000-41999 22.50329413519628 26.80990975312632 28.040341761347154 22.64645435033024 42000-43999 22.915596664670645 27.318363956100132 27.437651920559897 22.328387458669326 44000-45999 23.204035438756808 27.169363436319998 27.131025717781874 22.49557540714132 46000-47999 23.042261510278145 26.80855127785865 28.6977736232379 21.451413588625307 48000-49999 24.010827429488035 25.76861382168159 27.68212805774629 22.53843069108408 50000-51999 23.088151741619683 26.241860058563876 27.710764389668284 22.959223810148156 52000-53999 24.39008810247994 26.00325286345344 26.55162078098205 23.055038253084568 54000-55999 23.359412906356138 25.35116448326055 28.321809801067445 22.967612809315867 56000-57999 21.438953488372093 28.246618414807784 29.054194352159467 21.260233744660656 58000-59999 22.01804013214859 27.805845809830444 29.382045613120706 20.794068444900258 60000-61999 20.144369300234676 27.13410105851016 30.972066817835252 21.74946282341991 62000-63999 19.945669969318086 24.731078475363514 36.795255824106526 18.527995731211874 64000-65999 19.5240914601483 23.934985480278552 36.60661422650765 19.934308833065494 66000-67999 21.13793206464912 26.267439428793356 31.809219370836196 20.785409135721327 68000-69999 21.026022064643264 27.10591351822837 33.16319113537612 18.70487328175225 70000-71999 22.418333333333333 28.153333333333336 29.971666666666668 19.456666666666667 72000-73999 19.928100319868655 31.228239023975995 29.99405553825686 18.84960511789849 74000-75999 20.9 29.10625 27.256249999999998 22.7375 76000-77999 22.069417157825804 29.684722612031063 25.830292824398914 22.415567405744223 78000-79999 21.233333333333334 30.099999999999998 26.216666666666665 22.45 80000-81999 20.630105017502917 29.451575262543756 26.977829638273043 22.940490081680277 82000-83999 20.275000000000002 33.45 26.174999999999997 20.1 84000-85999 22.650000000000002 31.974999999999998 24.075 21.3 86000-87999 17.5 26.200000000000003 29.349999999999998 26.950000000000003 88000-89999 21.349999999999998 26.375 30.0 22.275 90000-91999 17.829716193656093 31.318864774624373 30.283806343906512 20.56761268781302 92000-93999 20.549999999999997 33.5 26.3 19.650000000000002 94000-95999 18.6 35.35 25.05 21.0 96000-97999 16.2 33.35 28.999999999999996 21.45 98000-99999 17.549999999999997 26.3 30.55 25.6 100000-101999 17.4 28.7 26.200000000000003 27.700000000000003 102000-103999 23.849999999999998 21.45 23.45 31.25 104000-105999 21.55 26.900000000000002 28.349999999999998 23.200000000000003 106000-107999 20.9 26.700000000000003 30.8 21.6 108000-109999 26.900000000000002 31.4 24.85 16.85 110000-110539 25.0 31.851851851851855 23.333333333333332 19.814814814814817 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.3333333333333333 25 0.4242424242424242 26 1.1280738418669454 27 1.25 28 1.2833333333333332 29 1.935033615901783 30 2.8766233766233764 31 2.9860529255690547 32 3.9881057398759996 33 6.957345705565218 34 5.360516117552443 35 6.000385263799812 36 5.792796241607398 37 8.610509974074494 38 9.905937310274474 39 11.024094473030482 40 10.397931563592763 41 11.999111178016408 42 13.379548292079019 43 14.126514470269779 44 13.94307721959876 45 13.767094319714044 46 15.63486349496574 47 14.57606823394294 48 14.443720888894145 49 19.17358435126778 50 16.35614750121718 51 13.694728116053795 52 10.617694292486766 53 10.652025746024325 54 8.287472757009814 55 7.700873081596629 56 6.023683865342693 57 5.7248050240148 58 3.298124053379452 59 1.3633530645847989 60 1.6348747371604793 61 1.5466502008794771 62 1.0661071697560323 63 0.6385281385281385 64 0.18614718614718614 65 0.5885281385281385 66 0.6978424801005446 67 0.09090909090909091 68 0.7969696969696971 69 0.8894009216589862 70 0.24816715542521994 71 0.0 72 0.13852813852813853 73 0.25757575757575757 74 0.1 75 0.16666666666666666 76 0.0 77 0.0 78 0.0 79 0.0 80 0.0 81 0.0 82 0.0 83 0.0 84 0.0 85 0.0 86 0.0 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-1999 0.0 2000-3999 0.0 4000-5999 0.0 6000-7999 0.0 8000-9999 0.0 10000-11999 0.0 12000-13999 0.0 14000-15999 0.0 16000-17999 0.0 18000-19999 0.0 20000-21999 0.0 22000-23999 0.0 24000-25999 0.0 26000-27999 0.0 28000-29999 0.0 30000-31999 0.0 32000-33999 0.0 34000-35999 0.0 36000-37999 0.0 38000-39999 0.0 40000-41999 0.0 42000-43999 0.0 44000-45999 0.0 46000-47999 0.0 48000-49999 0.0 50000-51999 0.0 52000-53999 0.0 54000-55999 0.0 56000-57999 0.0 58000-59999 0.0 60000-61999 0.0 62000-63999 0.0 64000-65999 0.0 66000-67999 0.0 68000-69999 0.0 70000-71999 0.0 72000-73999 0.0 74000-75999 0.0 76000-77999 0.0 78000-79999 0.0 80000-81999 0.0 82000-83999 0.0 84000-85999 0.0 86000-87999 0.0 88000-89999 0.0 90000-91999 0.0 92000-93999 0.0 94000-95999 0.0 96000-97999 0.0 98000-99999 0.0 100000-101999 0.0 102000-103999 0.0 104000-105999 0.0 106000-107999 0.0 108000-109999 0.0 110000-110539 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 0-4999 2036.0 5000-9999 1218.0 10000-14999 781.0 15000-19999 658.0 20000-24999 383.0 25000-29999 263.0 30000-34999 207.0 35000-39999 119.0 40000-44999 72.0 45000-49999 66.0 50000-54999 31.0 55000-59999 39.0 60000-64999 18.0 65000-69999 5.0 70000-74999 22.0 75000-79999 5.0 80000-84999 1.0 85000-89999 0.0 90000-94999 1.0 95000-99999 0.0 100000-104999 0.0 105000-109999 0.0 110000-110540 1.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 92.27134660816739 #Duplication Level Percentage of deduplicated Percentage of total 1 99.52450621799561 91.83260209247385 2 0.0 0.0 3 0.0 0.0 4 0.0182882223847842 0.06749915626054674 5 0.0 0.0 6 0.0 0.0 7 0.0 0.0 8 0.0 0.0 9 0.0 0.0 >10 0.45720555961960496 8.09989875126561 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GGCCGCTAGGGGTGCGGGGTTGGGGAGGAGGCCGCTAGTCTACGCCTGTG 20 0.3374957813027337 No Hit CAGTCGGGCCTCGGTCGCCACGGTAACGCGCGCGGGCAGGTGTCCGACCA 20 0.3374957813027337 No Hit GTGGAGGTGTCTCTGCCCAGCGTGGAGACGGATGTCCAGGCCCCAGGATC 20 0.3374957813027337 No Hit CAGAGGTCAGACGGTCTAGCGCTGCGTGGGCCATGGTGCAGCTCCGACCG 20 0.3374957813027337 No Hit CGCAGAGGCACCGCCCCAAGTTTGTTGTGACCGGCGGGGGACGCCGGTGG 20 0.3374957813027337 No Hit GCCGGCGCGCCCCTGGGAGGGTGAGCCGGCGCCGGGCCCAGGCCCGGACC 20 0.3374957813027337 No Hit CTTACTTCGAAGGCTGTGCTCCGCTCACCATCCAGAGCGGAGGTGCGGAC 20 0.3374957813027337 No Hit GTGCAGAAGGCCGCGCTAGCCGGCTCTTCAGCAGCGAGTGCAGATTGCTC 20 0.3374957813027337 No Hit TTCCAGGATATGAACTCTACAGCGGAAGAATAAGAAACCGGAACTAAACT 20 0.3374957813027337 No Hit GTGGCGCGAGCTTCTGAAACTAGGCGGCAGAGGCGGAGCCGCTGTGGCAC 20 0.3374957813027337 No Hit GGACGCAACCATCTGCGGAAAGGATAGGGGGGAGGAAGACTTAACACTGC 20 0.3374957813027337 No Hit CTCTTCTCCCCTGGGTTCAGCTGGGGGCCTTACGGAACTCCAGGGTGCTG 20 0.3374957813027337 No Hit GCGCAGAACTTGGGGAGCCGCCGCCGCCATCCGCCGCCGCAGCCAGCTTC 20 0.3374957813027337 No Hit ACTTCCGCGGCCAGTGCGAGAGGCGAGGGAGCTCCAGCTCTGCCTGTAAG 20 0.3374957813027337 No Hit CGGGGTGGGATTCCAACCCAGAAGCGGGCATTTGGAGCCCTCATGCTTCA 20 0.3374957813027337 No Hit ACAAACACAAACACAAACACGAACACGAACACGCTCAGCGTCCCCGGGGA 20 0.3374957813027337 No Hit AATCAGCGCGTTCCGCGGCGGGCCCGGCCCCTCCTGGTCAGCGCGCTAGC 20 0.3374957813027337 No Hit GGGAGGGAGAGAGGCGCGCGGGTGAAAGGCGCATTGATGCAGCCTGCGGC 20 0.3374957813027337 No Hit AACTTGGGCAGAGGTCAGGGGTCACGCGAGGTCAGTCCGTCGGGAGGGCT 20 0.3374957813027337 No Hit CCCGCGCTCCTCCCGGGGACCTGGTTCCCGGCCTCCTCGCCCCTCCGCGC 20 0.3374957813027337 No Hit GGGCCTCATTGCTGCAGACGCTCACCCCAGACACTCACTGCACCGGAGTG 20 0.3374957813027337 No Hit GTTCTGAAAAGTGCCTTTTCTGAAAACTCTGCTGCTTGGATTCTACTCTA 20 0.3374957813027337 No Hit GCTTGGAAGCCAGCGCTGCGCTCCCCGTGGGAAGCGATCGTCTCCTCTGT 20 0.3374957813027337 No Hit ATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAAC 10 0.16874789065136686 No Hit ATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAAGCCATTGGAAC 10 0.16874789065136686 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10-1999 0.0 0.0 0.0 0.0 0.0 2000-3999 0.0 0.0 0.0 0.0 0.0 4000-5999 0.0 0.0 0.0 0.0 0.0 6000-7999 0.0 0.0 0.0 0.0 0.0 8000-9999 0.0 0.0 0.0 0.0 0.0 10000-11999 0.0 0.0 0.0 0.0 0.0 12000-13999 0.0 0.0 0.0 0.0 0.0 14000-15999 0.0 0.0 0.0 0.0 0.0 16000-17999 0.0 0.0 0.0 0.0 0.0 18000-19999 0.0 0.0 0.0 0.0 0.0 20000-21999 0.0 0.0 0.0 0.0 0.0 22000-23999 0.0 0.0 0.0 0.0 0.0 24000-25999 0.0 0.0 0.0 0.0 0.0 26000-27999 0.0 0.0 0.0 0.0 0.0 28000-29999 0.0 0.0 0.0 0.0 0.0 30000-31999 0.0 0.0 0.0 0.0 0.0 32000-33999 0.0 0.0 0.0 0.0 0.0 34000-35999 0.0 0.0 0.0 0.0 0.0 36000-37999 0.0 0.0 0.0 0.0 0.0 38000-39999 0.0 0.0 0.0 0.0 0.0 40000-41999 0.0 0.0 0.0 0.0 0.0 42000-43999 0.0 0.0 0.0 0.0 0.0 44000-45999 0.0 0.0 0.0 0.0 0.0 46000-47999 0.0 0.0 0.0 0.0 0.0 48000-49999 0.0 0.0 0.0 0.0 0.0 50000-51999 0.0 0.0 0.0 0.0 0.0 52000-53999 0.0 0.0 0.0 0.0 0.0 54000-55999 0.0 0.0 0.0 0.0 0.0 56000-57999 0.0 0.0 0.0 0.0 0.0 58000-59999 0.0 0.0 0.0 0.0 0.0 60000-61999 0.0 0.0 0.0 0.0 0.0 62000-63999 0.0 0.0 0.0 0.0 0.0 64000-65999 0.0 0.0 0.0 0.0 0.0 66000-67999 0.0 0.0 0.0 0.0 0.0 68000-69999 0.0 0.0 0.0 0.0 0.0 70000-71999 0.0 0.0 0.0 0.0 0.0 72000-73999 0.0 0.0 0.0 0.0 0.0 74000-75999 0.0 0.0 0.0 0.0 0.0 76000-77999 0.0 0.0 0.0 0.0 0.0 78000-79999 0.0 0.0 0.0 0.0 0.0 80000-81999 0.0 0.0 0.0 0.0 0.0 82000-83999 0.0 0.0 0.0 0.0 0.0 84000-85999 0.0 0.0 0.0 0.0 0.0 86000-87999 0.0 0.0 0.0 0.0 0.0 88000-89999 0.0 0.0 0.0 0.0 0.0 90000-91999 0.0 0.0 0.0 0.0 0.0 92000-93999 0.0 0.0 0.0 0.0 0.0 94000-95999 0.0 0.0 0.0 0.0 0.0 96000-97999 0.0 0.0 0.0 0.0 0.0 98000-99999 0.0 0.0 0.0 0.0 0.0 100000-101999 0.0 0.0 0.0 0.0 0.0 102000-103999 0.0 0.0 0.0 0.0 0.0 104000-105999 0.0 0.0 0.0 0.0 0.0 106000-107999 0.0 0.0 0.0 0.0 0.0 108000-109999 0.0 0.0 0.0 0.0 0.0 110000-110527 0.0 0.0 0.0 0.0 0.0 >>END_MODULE