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This is the development home of the workflow management system Snakemake. For general information, see
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cbrueffer and johanneskoester Fix typos in the command line help. (#20)
* Fix typos in Tibanna command line help.

* Fix more typos and whitespace issues in command usage info.
Latest commit 44206be Oct 11, 2019
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.circleci Fix issue #8. (#9) Oct 7, 2019
.github/ISSUE_TEMPLATE Update issue templates Oct 7, 2019
docs try adding dimensions badge Oct 9, 2019
examples cleanup Oct 7, 2019
images Move logos. Dec 5, 2016
misc/vim remove bitbucket traces from docs and wrapper code. Oct 7, 2019
snakemake Fix typos in the command line help. (#20) Oct 11, 2019
tests updated report Oct 7, 2019
.coveragerc Fix issue #8. (#9) Oct 7, 2019
.dockerignore Squash docker image and fix versioneer. Jun 20, 2018
.gitattributes Update .gitattributes Oct 7, 2019
.gitignore Merged in sebastian_kurscheid/snakemake/azure_integration (pull reque… Oct 2, 2019
.readthedocs.yml use pip Mar 26, 2019 refactoring+formatting (#3) Oct 7, 2019
AUTHORS.rst Starting off with Sphinx docs Dec 6, 2016
CHANGELOG.rst update changelog Oct 7, 2019
Dockerfile Squash docker image and fix versioneer. Jun 20, 2018 Starting off with Sphinx docs Dec 6, 2016 Merged in chrisburr/add-licensemd-to-manifestin-1551554667600 (pull r… Oct 4, 2019 Merge branch 'master' of Oct 7, 2019
doc-environment.yml remove bioconda channel for doc env Mar 25, 2019
environment.yml Add azure dependencies. Be more detailed in error message. Oct 2, 2019
setup.cfg Add setup.cfg Feb 6, 2018 fix url Oct 7, 2019
test-environment.yml Fix issue #8. (#9) Oct 7, 2019 Setup versioneer. Feb 6, 2018

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The Snakemake workflow management system is a tool to create reproducible and scalable data analyses. Workflows are described via a human readable, Python based language. They can be seamlessly scaled to server, cluster, grid and cloud environments, without the need to modify the workflow definition. Finally, Snakemake workflows can entail a description of required software, which will be automatically deployed to any execution environment.


Note: Snakemake has just (Oct 4 2019) moved from to Github. Forks and stars are not yet insightful here!

Copyright (c) 2012-2019 Johannes Köster (see LICENSE)

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