From d48ce160411773a654e3906f3cdfa3aa437b55ec Mon Sep 17 00:00:00 2001 From: Johannes Koester Date: Thu, 12 Oct 2023 10:46:58 +0200 Subject: [PATCH] fix: adapt to API changes --- pyproject.toml | 4 ++-- snakemake_executor_plugin_cluster_sync/__init__.py | 2 +- tests/tests.py | 4 ++-- 3 files changed, 5 insertions(+), 5 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index b1f70f4..60471c4 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -7,8 +7,8 @@ readme = "README.md" [tool.poetry.dependencies] python = "^3.9" -snakemake-interface-common = "^1.4.1" -snakemake-interface-executor-plugins = "^4.0.0" +snakemake-interface-common = "^1.12.0" +snakemake-interface-executor-plugins = "^6.0.0" [tool.poetry.group.dev.dependencies] diff --git a/snakemake_executor_plugin_cluster_sync/__init__.py b/snakemake_executor_plugin_cluster_sync/__init__.py index 5bb8277..6397373 100644 --- a/snakemake_executor_plugin_cluster_sync/__init__.py +++ b/snakemake_executor_plugin_cluster_sync/__init__.py @@ -58,7 +58,7 @@ def __init__( workflow, logger, # whether arguments for setting the remote provider shall be passed to jobs - pass_default_remote_provider_args=True, + pass_default_storage_provider_args=True, # whether arguments for setting default resources shall be passed to jobs pass_default_resources_args=True, # whether environment variables shall be passed to jobs diff --git a/tests/tests.py b/tests/tests.py index 915dcac..89a0c3b 100644 --- a/tests/tests.py +++ b/tests/tests.py @@ -18,8 +18,8 @@ def get_executor(self) -> str: def get_executor_settings(self) -> Optional[ExecutorSettingsBase]: return ExecutorSettings(submit_cmd=self._get_cmd("qsub.sh")) - def get_default_remote_provider(self) -> Optional[str]: + def get_default_storage_provider(self) -> Optional[str]: return None - def get_default_remote_prefix(self) -> Optional[str]: + def get_default_storage_prefix(self) -> Optional[str]: return None