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fix: obtaining conda prefix when using in combination with singularity (
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johanneskoester committed Mar 30, 2022
1 parent 92887a3 commit 99b22d3
Showing 1 changed file with 3 additions and 1 deletion.
4 changes: 3 additions & 1 deletion snakemake/deployment/
Expand Up @@ -564,7 +564,9 @@ def __init__(self, container_img=None, prefix_path=None):

if prefix_path is None or container_img is not None:
self.prefix_path = json.loads(
shell.check_output(self._get_cmd("conda info --json"))
self._get_cmd("conda info --json"), universal_newlines=True
self.prefix_path = prefix_path
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