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fix: Disable Persistence cache for snakemake jobs #1159

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merged 4 commits into from Sep 5, 2021
Merged

fix: Disable Persistence cache for snakemake jobs #1159

merged 4 commits into from Sep 5, 2021

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veprbl
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@veprbl veprbl commented Aug 29, 2021

Description

Fixes #1158

QC

  • The PR contains a test case for the changes or the changes are already covered by an existing test case.
  • The documentation (docs/) is updated to reflect the changes or this is not necessary (e.g. if the change does neither modify the language nor the behavior or functionalities of Snakemake).

@veprbl veprbl requested a review from johanneskoester as a code owner Aug 29, 2021
@veprbl veprbl changed the title Disable Persistence cache for snakemake jobs fix: Disable Persistence cache for snakemake jobs Aug 29, 2021
@sonarcloud
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sonarcloud bot commented Aug 29, 2021

Kudos, SonarCloud Quality Gate passed!    Quality Gate passed

Bug A 0 Bugs
Vulnerability A 0 Vulnerabilities
Security Hotspot A 0 Security Hotspots
Code Smell A 0 Code Smells

No Coverage information No Coverage information
0.0% 0.0% Duplication

@johanneskoester
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johanneskoester commented Aug 30, 2021

Very good catch!

@sonarcloud
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sonarcloud bot commented Aug 30, 2021

Kudos, SonarCloud Quality Gate passed!    Quality Gate passed

Bug A 0 Bugs
Vulnerability A 0 Vulnerabilities
Security Hotspot A 0 Security Hotspots
Code Smell A 0 Code Smells

No Coverage information No Coverage information
0.0% 0.0% Duplication

@johanneskoester johanneskoester merged commit 7110f9d into snakemake:main Sep 5, 2021
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Successfully merging this pull request may close these issues.

Every --cluster job performs os.walk(".snakemake/incomplete") causing a deadlock
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