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fix: do not pass SNAKEMAKE_PROFILE into cluster-submit (#1398) #1407

merged 3 commits into from Feb 18, 2022


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Resolved #1398 by not passing SNAKEMAKE_PROFILE into the cluster submission.


  • The PR contains a test case for the changes or the changes are already covered by an existing test case.
  • The documentation (docs/) is updated to reflect the changes or this is not necessary (e.g. if the change does neither modify the language nor the behavior or functionalities of Snakemake).

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Can you fix the conflict, both commits are your code I think.

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Contributor Author

should be done

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sonarcloud bot commented Feb 18, 2022

Kudos, SonarCloud Quality Gate passed!    Quality Gate passed

Bug A 0 Bugs
Vulnerability A 0 Vulnerabilities
Security Hotspot A 0 Security Hotspots
Code Smell A 0 Code Smells

No Coverage information No Coverage information
0.0% 0.0% Duplication

@johanneskoester johanneskoester merged commit 7189183 into snakemake:main Feb 18, 2022
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Successfully merging this pull request may close these issues.

SNAKEMAKE_PROFILE environment variable does not play well with Slurm
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