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fix: fix singularity logging messages causing conda fail #1523


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This modification aims to fix issue #749 and #520. I use the resolution coming from the issue #520.
As a reminder, the problem is that Singularity's logging messages interfere with the verification of the conda version that is done. This solution of @mariafiruleva seems to solve the problem and does not present any side effects


  • The PR contains a test case for the changes or the changes are already covered by an existing test case.
  • The documentation (docs/) is updated to reflect the changes or this is not necessary (e.g. if the change does neither modify the language nor the behavior or functionalities of Snakemake).

@johanneskoester johanneskoester changed the title fix singularity logging messages causing conda fail fix: fix singularity logging messages causing conda fail Mar 28, 2022
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sonarcloud bot commented Mar 28, 2022

Kudos, SonarCloud Quality Gate passed!    Quality Gate passed

Bug A 0 Bugs
Vulnerability A 0 Vulnerabilities
Security Hotspot A 0 Security Hotspots
Code Smell A 0 Code Smells

No Coverage information No Coverage information
0.0% 0.0% Duplication

@johanneskoester johanneskoester merged commit 7797595 into snakemake:main Mar 28, 2022
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2 participants