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fix: allow apptainer as a successor to singularity. #1706

merged 1 commit into from Jun 15, 2022


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@bilke bilke commented Jun 8, 2022

Closes #1570.



  • The PR contains a test case for the changes or the changes are already covered by an existing test case.
  • The documentation (docs/) is updated to reflect the changes or this is not necessary (e.g. if the change does neither modify the language nor the behavior or functionalities of Snakemake).

@bilke bilke requested a review from johanneskoester as a code owner Jun 8, 2022
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sonarcloud bot commented Jun 8, 2022

Kudos, SonarCloud Quality Gate passed!    Quality Gate passed

Bug A 0 Bugs
Vulnerability A 0 Vulnerabilities
Security Hotspot A 0 Security Hotspots
Code Smell A 2 Code Smells

No Coverage information No Coverage information
0.6% 0.6% Duplication

@johanneskoester johanneskoester merged commit bcbdb0b into snakemake:main Jun 15, 2022
7 checks passed
@bilke bilke deleted the apptainer-version-check branch Jun 20, 2022
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Support apptainer with --use-singularity
2 participants