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<isatab-config-file xmlns="http://www.ebi.ac.uk/bii/isatab_configuration#"><isatab-configuration table-name="metaboliteprofiling_ms" isatab-assay-type="ms_spec_assay" isatab-conversion-target="generic"><measurement term-label="metabolite profiling" term-accession="0000366" source-abbreviation="OBI"/><technology term-label="mass spectrometry" term-accession="" source-abbreviation="OBI"/><field header="Sample Name" data-type="String" is-file-field="false" is-multiple-value="true" is-required="false" is-hidden="false" is-forced-ontology="false"><description><![CDATA[Samples represent major outputs resulting from a protocol application other than the special case outputs of Extract or a Labeled Extract.]]></description><default-value><![CDATA[]]></default-value><generated-value-template>[INSTITUTION].Group-[GROUP_NO].Subject-[SUBJECT_NO].[SAMPLE_EXTRACT]
</generated-value-template></field><protocol-field protocol-type ="extraction"/><field header="Extract Name" data-type="String" is-file-field="false" is-multiple-value="false" is-required="false" is-hidden="false" is-forced-ontology="false"><description><![CDATA[User-defined names for each portion of extracted material.]]></description><default-value><![CDATA[]]></default-value><generated-value-template>
[INSTITUTION].Group-[GROUP_NO].Subject-[SUBJECT_NO].[SAMPLE_EXTRACT].Extract-[EXTRACT_COUNT]
</generated-value-template></field><protocol-field protocol-type ="labeling"/><field header="Labeled Extract Name" data-type="String" is-file-field="false" is-multiple-value="false" is-required="false" is-hidden="false" is-forced-ontology="false"><description><![CDATA[Identifier for the labeled extract.]]></description><default-value><![CDATA[]]></default-value><generated-value-template>
[INSTITUTION].Group-[GROUP_NO].Subject-[SUBJECT_NO].[SAMPLE_EXTRACT].Extract-[EXTRACT_COUNT].LE-[LABEL_COUNT]
</generated-value-template></field><field header="Label" data-type="Ontology term" is-file-field="false" is-multiple-value="false" is-required="false" is-hidden="false" is-forced-ontology="false"><description><![CDATA[Indicates a chemical or biological marker, such as a radioactive isotope or a fluorescent dye which is bound to a material in order to make it detectable by some assay technology (e.g. P33, biotin, GFP).]]></description><default-value></default-value><recommended-ontologies><ontology id="1007" abbreviation="CHEBI" name="Chemical entities of biological interest" version="40664"/></recommended-ontologies></field><protocol-field protocol-type ="mass spectrometry"/><field header="Parameter Value[instrument]" data-type="Ontology term" is-file-field="false" is-multiple-value="false" is-required="false" is-hidden="false" is-forced-ontology="false"><description><![CDATA[the name of the mass spectrometry instrument]]></description><default-value></default-value><recommended-ontologies><ontology id="1105" abbreviation="MS" name="Mass spectrometry" version="40763"/></recommended-ontologies></field><field header="Parameter Value[ion source]" data-type="Ontology term" is-file-field="false" is-multiple-value="false" is-required="false" is-hidden="false" is-forced-ontology="false"><description><![CDATA[the ion source used by the mass spectrometer, use PSI-MS cv]]></description><default-value></default-value><recommended-ontologies><ontology id="1105" abbreviation="MS" name="Mass spectrometry" version="40763"/></recommended-ontologies></field><field header="Parameter Value[detector]" data-type="Ontology term" is-file-field="false" is-multiple-value="false" is-required="false" is-hidden="false" is-forced-ontology="false"><description><![CDATA[the detector used by the mass spectrometer, use PSI-MS cv]]></description><default-value></default-value><recommended-ontologies><ontology id="1105" abbreviation="MS" name="Mass spectrometry" version="40763"/></recommended-ontologies></field><field header="Parameter Value[analyzer]" data-type="Ontology term" is-file-field="false" is-multiple-value="false" is-required="false" is-hidden="false" is-forced-ontology="false"><description><![CDATA[the analyzer(s) used by the mass spectrometer, use PSI-MS cv]]></description><default-value></default-value><recommended-ontologies><ontology id="1105" abbreviation="MS" name="Mass spectrometry" version="40763"/></recommended-ontologies></field><field header="MS Assay Name" data-type="String" is-file-field="false" is-multiple-value="false" is-required="false" is-hidden="false" is-forced-ontology="false"><description><![CDATA[User-defined name for a MS assay.]]></description><default-value><![CDATA[]]></default-value><generated-value-template>
[INSTITUTION].Group-[GROUP_NO].Subject-[SUBJECT_NO].[SAMPLE_EXTRACT].Extract-[EXTRACT_COUNT].LE-[LABEL_COUNT].MSASSAY-[HYB_COUNT]
</generated-value-template></field><field header="Raw Spectral Data File" data-type="String" is-file-field="true" is-multiple-value="false" is-required="false" is-hidden="false" is-forced-ontology="false"><description><![CDATA[Name (or URI) of the raw spectral data file generated by an assay.]]></description><default-value><![CDATA[]]></default-value></field><protocol-field protocol-type ="data transformation"/><field header="Normalization Name" data-type="String" is-file-field="false" is-multiple-value="false" is-required="false" is-hidden="false" is-forced-ontology="false"><description><![CDATA[User-defined name for each normalization applied]]></description><default-value><![CDATA[]]></default-value></field><field header="Data Transformation Name" data-type="String" is-file-field="false" is-multiple-value="true" is-required="false" is-hidden="false" is-forced-ontology="false"><description><![CDATA[User-defined name for each data transformation applied]]></description><default-value><![CDATA[]]></default-value></field><field header="Derived Spectral Data File" data-type="String" is-file-field="true" is-multiple-value="false" is-required="false" is-hidden="false" is-forced-ontology="false"><description><![CDATA[Name (or URI) of the derived data file generated from spectral data by an assay.]]></description><default-value><![CDATA[]]></default-value></field><protocol-field protocol-type ="identification"/><field header="Metabolite Assignment File" data-type="String" is-file-field="true" is-multiple-value="false" is-required="false" is-hidden="false" is-forced-ontology="false"><description><![CDATA[Name (or URI) of the metabolite assignment file gathered for this assay.]]></description><default-value><![CDATA[]]></default-value></field><structured-field name="factors"/></isatab-configuration></isatab-config-file>