diff --git a/CHANGELOG.md b/CHANGELOG.md index 7edefa6..f5f55b2 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -2,31 +2,27 @@ ## [0.0.3](https://github.com/socialgene/sgnf/compare/v0.0.2...v0.0.3) (2023-06-17) - ### Bug Fixes -* add curl to minimal docker image ([0c5d47b](https://github.com/socialgene/sgnf/commit/0c5d47b6fa449fed67d4ce74aada9e503556b591)) -* antismash docker call ([2abe262](https://github.com/socialgene/sgnf/commit/2abe262757a5040eebf8dc0c7f659f0f03a7ea7d)) +- add curl to minimal docker image ([0c5d47b](https://github.com/socialgene/sgnf/commit/0c5d47b6fa449fed67d4ce74aada9e503556b591)) +- antismash docker call ([2abe262](https://github.com/socialgene/sgnf/commit/2abe262757a5040eebf8dc0c7f659f0f03a7ea7d)) ## [0.0.2](https://github.com/socialgene/sgnf/compare/v0.0.1...v0.0.2) (2023-06-16) - ### Bug Fixes -* change ncbi-genome-download docker ([295606b](https://github.com/socialgene/sgnf/commit/295606b66ee1ec861ba5eff6c71b6197b5ccdcd4)) -* loosen accessory version pins in sgpy base docker ([ca94c3e](https://github.com/socialgene/sgnf/commit/ca94c3ec0cda3556fab7eb7d4cbef58d5b8bfbe8)) -* ncbi-genome-download error ([f881373](https://github.com/socialgene/sgnf/commit/f881373cdd1bf3cf68c65cd2962e13e4b82a1834)) -* socialgene is now on PyPI ([82af357](https://github.com/socialgene/sgnf/commit/82af3575e07ca8ddd5949640672f6205f74a2402)) +- change ncbi-genome-download docker ([295606b](https://github.com/socialgene/sgnf/commit/295606b66ee1ec861ba5eff6c71b6197b5ccdcd4)) +- loosen accessory version pins in sgpy base docker ([ca94c3e](https://github.com/socialgene/sgnf/commit/ca94c3ec0cda3556fab7eb7d4cbef58d5b8bfbe8)) +- ncbi-genome-download error ([f881373](https://github.com/socialgene/sgnf/commit/f881373cdd1bf3cf68c65cd2962e13e4b82a1834)) +- socialgene is now on PyPI ([82af357](https://github.com/socialgene/sgnf/commit/82af3575e07ca8ddd5949640672f6205f74a2402)) ## 0.0.1 (2023-06-15) - ### Bug Fixes -* fixing lint ([31e4c0f](https://github.com/socialgene/sgnf/commit/31e4c0f1ee608b2216856014b092ef3fc8f1393a)) -* reset release please ([b22acbb](https://github.com/socialgene/sgnf/commit/b22acbba3606e3eda124083d048067ed139e2bc8)) - +- fixing lint ([31e4c0f](https://github.com/socialgene/sgnf/commit/31e4c0f1ee608b2216856014b092ef3fc8f1393a)) +- reset release please ([b22acbb](https://github.com/socialgene/sgnf/commit/b22acbba3606e3eda124083d048067ed139e2bc8)) ### Miscellaneous Chores -* release 0.0.1 ([9d1cf65](https://github.com/socialgene/sgnf/commit/9d1cf65873f05cbbe7fb00a986780678f5a5d704)) +- release 0.0.1 ([9d1cf65](https://github.com/socialgene/sgnf/commit/9d1cf65873f05cbbe7fb00a986780678f5a5d704)) diff --git a/nextflow_schema.json b/nextflow_schema.json index aeda558..0ff1e44 100644 --- a/nextflow_schema.json +++ b/nextflow_schema.json @@ -83,8 +83,20 @@ "description": "File path of a custom HMMER hmm file" }, "hmmlist": { - "type": "array", - "description": "[\"all\"] or some combination of [\"antismash\",\"amrfinder\",\"bigslice\",\"classiphage\",\"pfam\",\"prism\",\"resfams\",\"tigrfam\",\"virus_orthologous_groups\"]" + "type": "string", + "description": "'all' or some combination of 'antismash', 'amrfinder', 'bigslice', 'classiphage','pfam', 'prism', 'resfams', 'tigrfam', 'virus_orthologous_groups'", + "enum": [ + "all", + "antismash", + "amrfinder", + "bigslice", + "classiphage", + "pfam", + "prism", + "resfams", + "tigrfam", + "virus_orthologous_groups" + ] }, "domtblout_path": { "type": "string", diff --git a/release-please-config.json b/release-please-config.json index 74bd71b..527c202 100644 --- a/release-please-config.json +++ b/release-please-config.json @@ -7,9 +7,7 @@ "bump-patch-for-minor-pre-major": true, "draft": false, "prerelease": false, - "extra-files": [ - "nextflow.config" - ] + "extra-files": ["nextflow.config"] } }, "$schema": "https://raw.githubusercontent.com/googleapis/release-please/main/schemas/config.json",