diff --git a/docs/source/refs.bib b/docs/source/refs.bib index b8902e4..e15906f 100644 --- a/docs/source/refs.bib +++ b/docs/source/refs.bib @@ -6,7 +6,8 @@ @article{strimmer2008fdrtool number={12}, pages={1461--1462}, year={2008}, - publisher={Oxford University Press} + publisher={Oxford University Press}, + DOI={10.1093/bioinformatics/btn209} } @article{siebert_soeding_2016, @@ -29,7 +30,8 @@ @article{yevshin2016gtrd journal={Nucleic Acids Res.}, pages={gkw951}, year={2016}, - publisher={Oxford University Press} + publisher={Oxford University Press}, + DOI={10.1093/nar/gkw951} } @article{khan2017jaspar, @@ -40,13 +42,20 @@ @article{khan2017jaspar number={D1}, pages={D260--D266}, year={2017}, - publisher={Oxford University Press} + publisher={Oxford University Press}, + DOI={10.1093/nar/gkx1126} } @article{hocomoco_2018, - title={HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis}, - volume={46}, DOI={10.1093/nar/gkx1106}, number={D1}, journal={Nucleic Acids Res.}, author={Kulakovskiy, Ivan V and Vorontsov, Ilya E and Yevshin, Ivan S and Sharipov, Ruslan N and Fedorova, Alla D and Rumynskiy, Eugene I and Medvedeva, Yulia A and Magana-Mora, Arturo and Bajic, Vladimir B and Papatsenko, Dmitry A and et al.}, year={2018}, pages={D252?D259}} + title={HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis}, + volume={46}, + DOI={10.1093/nar/gkx1106}, + number={D1}, + journal={Nucleic Acids Res.}, + author={Kulakovskiy, Ivan V and Vorontsov, Ilya E and Yevshin, Ivan S and Sharipov, Ruslan N and Fedorova, Alla D and Rumynskiy, Eugene I and Medvedeva, Yulia A and Magana-Mora, Arturo and Bajic, Vladimir B and Papatsenko, Dmitry A and et al.}, + year={2018}, + pages={D252--D259}} @article{quinlan2010bedtools, title={BEDTools: a flexible suite of utilities for comparing genomic features}, @@ -56,7 +65,8 @@ @article{quinlan2010bedtools number={6}, pages={841--842}, year={2010}, - publisher={Oxford University Press} + publisher={Oxford University Press}, + DOI={10.1093/bioinformatics/btq033} } @article{quinlan2014bedtools, @@ -65,7 +75,8 @@ @article{quinlan2014bedtools journal={Current protocols in bioinformatics}, pages={11--12}, year={2014}, - publisher={Wiley Online Library} + publisher={Wiley Online Library}, + DOI={10.1002/0471250953.bi1112s47} } @article{kiesel2018bammserver,