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| FROM alpine:3.7 as mmseqs-builder | |
| RUN apk add --no-cache gcc g++ cmake musl-dev vim git ninja zlib-dev bzip2-dev | |
| WORKDIR /opt/mmseqs | |
| ADD . . | |
| WORKDIR build_sse | |
| RUN cmake -G Ninja -DHAVE_SSE4_1=1 -DHAVE_MPI=0 -DHAVE_TESTS=0 -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=. .. | |
| RUN ninja && ninja install | |
| WORKDIR ../build_avx | |
| RUN cmake -G Ninja -DHAVE_AVX2=1 -DHAVE_MPI=0 -DHAVE_TESTS=0 -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=. .. | |
| RUN ninja && ninja install | |
| FROM alpine:3.7 | |
| MAINTAINER Milot Mirdita <milot@mirdita.de> | |
| RUN apk add --no-cache gawk bash grep libstdc++ libgomp zlib libbz2 | |
| COPY --from=mmseqs-builder /opt/mmseqs/build_sse/bin/mmseqs /usr/local/bin/mmseqs_sse42 | |
| COPY --from=mmseqs-builder /opt/mmseqs/build_avx/bin/mmseqs /usr/local/bin/mmseqs_avx2 | |
| ADD util/mmseqs_wrapper.sh /usr/local/bin/mmseqs | |
| CMD ["mmseqs"] |