Skip to content
Permalink
Browse files

Clarify parameter help in createdb

I was a little confused by the way the description for `--idx-entry-type` was written. I think this makes it clearer.
  • Loading branch information
smsaladi authored and milot-mirdita committed Jan 13, 2020
1 parent f644744 commit 31895414d5288f2e82496eecdb62f070394fc202
Showing with 1 addition and 1 deletion.
  1. +1 −1 src/commons/Parameters.cpp
@@ -235,7 +235,7 @@ Parameters::Parameters():
PARAM_TAXON_LIST(PARAM_TAXON_LIST_ID, "--taxon-list", "Selected taxa", "taxonomy ID, possibly multiple values separated by ','", typeid(std::string), (void*) &taxonList, ""),
// view
PARAM_ID_LIST(PARAM_ID_LIST_ID, "--id-list", "Selected entries with key", "entries to be printed seperated by ','", typeid(std::string), (void*) &idList, ""),
PARAM_IDX_ENTRY_TYPE(PARAM_IDX_ENTRY_TYPE_ID, "--idx-entry-type", "Index entry type", "sequence; 0, src sequence 1: header: 2, src header :3 (default 0)", typeid(int), (void*) &idxEntryType, "^[0-3]{1}$"),
PARAM_IDX_ENTRY_TYPE(PARAM_IDX_ENTRY_TYPE_ID, "--idx-entry-type", "Index entry type", "sequence: 0, src sequence: 1, header: 2, src header: 3 (default 0)", typeid(int), (void*) &idxEntryType, "^[0-3]{1}$"),
// lca and addtaxonomy
PARAM_PICK_ID_FROM(PARAM_PICK_ID_FROM_ID,"--pick-id-from", "Extract mode", "Query 1, Target 2", typeid(int), (void *) &pickIdFrom, "^[1-2]{1}$"),
PARAM_LCA_RANKS(PARAM_LCA_RANKS_ID, "--lca-ranks", "LCA ranks", "Add column with specified ranks (',' separated)", typeid(std::string), (void*) &lcaRanks, ""),

0 comments on commit 3189541

Please sign in to comment.
You can’t perform that action at this time.