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Replace biorxiv citation for taxonomy paper
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milot-mirdita committed May 17, 2021
1 parent 24f6b52 commit 62f7aba
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2 changes: 1 addition & 1 deletion README.md
Expand Up @@ -9,7 +9,7 @@ MMseqs2 (Many-against-Many sequence searching) is a software suite to search and

[Mirdita M, Steinegger M and Soeding J. MMseqs2 desktop and local web server app for fast, interactive sequence searches. Bioinformatics, doi: 10.1093/bioinformatics/bty1057 (2019)](https://academic.oup.com/bioinformatics/article/35/16/2856/5280135).

[Mirdita M, Steinegger M, Breitwieser F, Soding J, Levy Karin E: Fast and sensitive taxonomic assignment to metagenomic contigs. bioRxiv, doi: 10.1101/2020.11.27.401018 (2020)](https://www.biorxiv.org/content/10.1101/2020.11.27.401018v1).
[Mirdita M, Steinegger M, Breitwieser F, Soding J, Levy Karin E: Fast and sensitive taxonomic assignment to metagenomic contigs. Bioinformatics, doi: 10.1093/bioinformatics/btab184 (2021)](https://doi.org/10.1093/bioinformatics/btab184).

[![BioConda Install](https://img.shields.io/conda/dn/bioconda/mmseqs2.svg?style=flag&label=BioConda%20install)](https://anaconda.org/bioconda/mmseqs2)
[![Github All Releases](https://img.shields.io/github/downloads/soedinglab/mmseqs2/total.svg)](https://github.com/soedinglab/mmseqs2/releases/latest)
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2 changes: 1 addition & 1 deletion src/commons/Parameters.cpp
Expand Up @@ -2398,7 +2398,7 @@ void Parameters::setDefaults() {
{ CITATION_LINCLUST, "Steinegger M, Soding J: Clustering huge protein sequence sets in linear time. Nature Communications, 9(1), 2542 (2018)" },
{ CITATION_PLASS, "Steinegger M, Mirdita M, Soding J: Protein-level assembly increases protein sequence recovery from metagenomic samples manyfold. Nature Methods, 16(7), 603-606 (2019)" },
{ CITATION_SERVER, "Mirdita M, Steinegger M, Soding J: MMseqs2 desktop and local web server app for fast, interactive sequence searches. Bioinformatics, 35(16), 2856–2858 (2019)" },
{ CITATION_TAXONOMY, "Mirdita M, Steinegger M, Breitwieser F, Soding J, Levy Karin E: Fast and sensitive taxonomic assignment to metagenomic contigs. bioRxiv, 2020.11.27.401018 (2020)" },
{ CITATION_TAXONOMY, "Mirdita M, Steinegger M, Breitwieser F, Soding J, Levy Karin E: Fast and sensitive taxonomic assignment to metagenomic contigs. Bioinformatics, btab184 (2021)" },
};
}

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