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order_redundancy is not a db, rm to remove

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elileka committed Mar 14, 2019
1 parent ebddda7 commit 6cbc8a77d863ec669362e5316aa945a797b5e235
Showing with 4 additions and 4 deletions.
  1. +2 −2 data/cascaded_clustering.sh
  2. +1 −1 data/clustering.sh
  3. +1 −1 data/linclust.sh
@@ -128,7 +128,7 @@ fi

if [ -n "$REMOVE_TMP" ]; then
echo "Remove temporary files"
"$MMSEQS" rmdb "${TMP_PATH}/order_redundancy"
rm -f "${TMP_PATH}/order_redundancy"
"$MMSEQS" rmdb "${TMP_PATH}/clu_redundancy"
"$MMSEQS" rmdb "${TMP_PATH}/aln_redundancy"
"$MMSEQS" rmdb "${TMP_PATH}/input_step_redundancy"
@@ -138,7 +138,7 @@ if [ -n "$REMOVE_TMP" ]; then
"$MMSEQS" rmdb "${TMP_PATH}/aln_step$STEP"
"$MMSEQS" rmdb "${TMP_PATH}/clu_step$STEP"
"$MMSEQS" rmdb "${TMP_PATH}/input_step$STEP"
"$MMSEQS" rmdb "${TMP_PATH}/order_step$STEP"
rm -f "${TMP_PATH}/order_step$STEP"
STEP=$((STEP+1))
done

@@ -68,9 +68,9 @@ if [ -n "$REMOVE_TMP" ]; then
"$MMSEQS" rmdb "${TMP_PATH}/pref"
"$MMSEQS" rmdb "${TMP_PATH}/aln"
"$MMSEQS" rmdb "${TMP_PATH}/clu_step0"
"$MMSEQS" rmdb "${TMP_PATH}/order_redundancy"
"$MMSEQS" rmdb "${TMP_PATH}/clu_redundancy"
"$MMSEQS" rmdb "${TMP_PATH}/aln_redundancy"
"$MMSEQS" rmdb "${TMP_PATH}/input_step_redundancy"
rm -f "${TMP_PATH}/order_redundancy"
rm -f "${TMP_PATH}/clustering.sh"
fi
@@ -90,7 +90,7 @@ if [ -n "$REMOVE_TMP" ]; then
"$MMSEQS" rmdb "${TMP_PATH}/pref_rescore1"
"$MMSEQS" rmdb "${TMP_PATH}/pre_clust"
"$MMSEQS" rmdb "${TMP_PATH}/input_step_redundancy"
"$MMSEQS" rmdb "${TMP_PATH}/order_redundancy"
rm -f "${TMP_PATH}/order_redundancy"

"$MMSEQS" rmdb "${TMP_PATH}/pref_filter1"
"$MMSEQS" rmdb "${TMP_PATH}/pref_filter2"

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