Check for .dbtype in blastpgp.sh #160

soedinglab · Feb 7, 2019 · 94bedc7ddf59171f65e04f84d3580707470e45f6 · 94bedc7
1 parent 0efc279
commit 94bedc7ddf59171f65e04f84d3580707470e45f6
Unified Split

Showing with 2 additions and 2 deletions.

+2 −2 data/blastpgp.sh
diff --git a/data/blastpgp.sh b/data/blastpgp.sh
@@ -27,7 +27,7 @@ STEP=0
 [ -z "$NUM_IT" ] && NUM_IT=3;
 while [ $STEP -lt $NUM_IT ]; do
    # call prefilter module
-  
-    if notExists "$TMP_PATH/pref_$STEP"; then
+  
+    if notExists "$TMP_PATH/pref_$STEP.dbtype"; then
        PARAM="PREFILTER_PAR_$STEP"
        eval TMP="\$$PARAM"
        # shellcheck disable=SC2086
@@ -49,7 +49,7 @@ while [ $STEP -lt $NUM_IT ]; do
    fi
 	# call alignment module
-  
-	if notExists "$TMP_PATH/aln_$STEP"; then
+  
+	if notExists "$TMP_PATH/aln_$STEP.dbtype"; then
 	    PARAM="ALIGNMENT_PAR_$STEP"
        eval TMP="\$$PARAM"
        STEPONE=$((STEP+1))