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fix quinci script

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martin-steinegger committed Apr 19, 2019
1 parent ff12909 commit a68186239ac24f05e04e1f809e91011a9e8fc3dc
Showing with 4 additions and 6 deletions.
  1. +4 −6 quinci/master
@@ -2,6 +2,7 @@

REPO_PATH=$(pwd)
# run build
mkdir "$REPO_PATH/debug"
mkdir "$REPO_PATH/build" && cd "$REPO_PATH/build"
cmake -DCMAKE_BUILD_TYPE=RelWithDebInfo -DHAVE_MPI=0 -DHAVE_SSE4_1=1 -DBUILD_SHARED_LIBS=OFF -DCMAKE_EXE_LINKER_FLAGS="-static -static-libgcc -static-libstdc++" -DCMAKE_FIND_LIBRARY_SUFFIXES=".a" ..
make -j $(nproc --all) VERBOSE=1
@@ -26,9 +27,9 @@ git clone https://bitbucket.org/martin_steinegger/mmseqs-benchmark.git
export TTY=0
export MMSEQS_NUM_THREADS=8
export PATH="$(pwd)/mmseqs-benchmark/":$PATH
./mmseqs-benchmark/run_regression.sh $REPO_PATH/build/src/mmseqs ~/regression/results/sse
./mmseqs-benchmark/run_regression.sh $REPO_PATH/build_avx2/src/mmseqs ~/regression/results/avx
./mmseqs-benchmark/run_regression.sh $REPO_PATH/build_mpi/src/mmseqs ~/regression/results/mpi
./mmseqs-benchmark/run_regression.sh $REPO_PATH/build/src/mmseqs $REPO_PATH/regression/results/sse
./mmseqs-benchmark/run_regression.sh $REPO_PATH/build_avx2/src/mmseqs $REPO_PATH/regression/results/avx
./mmseqs-benchmark/run_regression.sh $REPO_PATH/build_mpi/src/mmseqs $REPO_PATH/regression/results/mpi

# upload
cd $REPO_PATH
@@ -58,6 +59,3 @@ scp mmseqs-static_sse41.tar.gz codeship@uniclust.mmseqs.com:"/home/mirdita/repos
scp mmseqs-static_avx2.tar.gz codeship@uniclust.mmseqs.com:"/home/mirdita/repositories/mmseqs-webserver/archive/${QUINCI_COMMIT_SHA}"
scp mmseqs-debug-symbols.tar.gz codeship@uniclust.mmseqs.com:"/home/mirdita/repositories/mmseqs-webserver/archive/${QUINCI_COMMIT_SHA}"
ssh codeship@uniclust.mmseqs.com "update-latest-mmseqs.sh \"${QUINCI_COMMIT_SHA}\""



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