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Commits on Oct 21, 2018
Commits on Oct 19, 2018
  1. Allow indexed translated searches.

    martin-steinegger committed Oct 19, 2018
    Change index structure. Header data are now part of the index.
  2. Make orfstartmode consistent with search in createindex

    martin-steinegger committed Oct 19, 2018
  3. Adapt extractframes to the extractorf format

    martin-steinegger committed Oct 19, 2018
  4. Copy paste typo

    milot-mirdita committed Oct 19, 2018
  5. Fix code broken through omp_set_num_threads earlier

    milot-mirdita committed Oct 19, 2018
Commits on Oct 18, 2018
  1. Fix some bug in filterdb

    martin-steinegger committed Oct 18, 2018
  2. Fix bug if alignment < threads

    martin-steinegger committed Oct 18, 2018
  3. Add readMmapedDataInMemory to Prefilter if index is used

    martin-steinegger committed Oct 18, 2018
  4. First try to allow nucleotide searches

    martin-steinegger committed Oct 18, 2018
  5. Fix typo

    martin-steinegger committed Oct 18, 2018
  6. Remove redundant call to omp_set_num_threads everywhere

    milot-mirdita committed Oct 18, 2018
Commits on Oct 17, 2018
  1. count length of orf as the number of AAs coded (no stop)

    elileka committed Oct 17, 2018
  2. Cleanup Util::touchMemory

    milot-mirdita committed Oct 17, 2018
  3. Fix preload mode in alignall

    milot-mirdita committed Oct 17, 2018
  4. Refactor alignall to not use (the unused) query db at all

    milot-mirdita committed Oct 11, 2018
  5. Enrichment workflow WIP

    milot-mirdita committed Oct 11, 2018
  6. added check for legality of orf extraction parameters

    elileka committed Oct 17, 2018
  7. Use default search k-mer size in slice-profile search instead of fixe…

    milot-mirdita committed Oct 17, 2018
    …d 5-mer default size of target-profile search