Permalink
Commits on Nov 9, 2018
  1. Update README

    martin-steinegger committed Nov 9, 2018
Commits on Nov 8, 2018
  1. Update README

    martin-steinegger committed Nov 8, 2018
  2. Update README

    martin-steinegger committed Nov 8, 2018
  3. Update README

    martin-steinegger committed Nov 8, 2018
Commits on Nov 1, 2018
  1. Fix one bug in offset alignment

    martin-steinegger committed Nov 1, 2018
  2. Fix path in translated_search.sh

    martin-steinegger committed Nov 1, 2018
Commits on Oct 31, 2018
  1. Merge pull request #119 from SilasK/master

    martin-steinegger committed Oct 31, 2018
    small error in Readme
  2. Merge pull request #129 from afinit/patch-1

    martin-steinegger committed Oct 31, 2018
    Update README.md Static Linux Install Section
  3. Change sub.matrix in prefiltering

    martin-steinegger committed Oct 31, 2018
Commits on Oct 30, 2018
  1. Nucleotide search fixes.

    martin-steinegger committed Oct 30, 2018
    Split matrix in prefilter into two parts, seeding and ungapped alignment. 
    Update ALP.
Commits on Oct 29, 2018
  1. Shellcheck fix

    martin-steinegger committed Oct 29, 2018
  2. Fix easy-search by changing convertalignment --format-output to a com…

    martin-steinegger committed Oct 29, 2018
    …ma separated list
  3. Rework index for translated and nucleotide search

    martin-steinegger committed Oct 29, 2018
  4. Fix some issues in nucleotide search

    martin-steinegger committed Oct 29, 2018
  5. Fix for six frame index usage. Reader header from the second database…

    martin-steinegger committed Oct 29, 2018
    … in indexdb.
Commits on Oct 27, 2018
  1. Add sort to offsetalignments again

    martin-steinegger committed Oct 27, 2018
  2. Rework offsetalignment, convertalignment, extractorf, splitsequence t…

    martin-steinegger committed Oct 27, 2018
    …o show right alignment coordinates for nucleotide/nucleotide, nucleotide/protein, protein/nucleotide searches
Commits on Oct 25, 2018
Commits on Oct 24, 2018
  1. Fix dataSize problem in HeaderIdReader

    martin-steinegger committed Oct 24, 2018
  2. rework file open of convert2fasta

    martin-steinegger committed Oct 24, 2018
Commits on Oct 23, 2018
  1. Parameter parsin for nucl search

    martin-steinegger committed Oct 23, 2018
  2. Nucl. k parameter fix

    martin-steinegger committed Oct 23, 2018
  3. 15-mer spaced pattern

    martin-steinegger committed Oct 23, 2018
  4. Add threadIdx to splitsequence

    martin-steinegger committed Oct 23, 2018
Commits on Oct 22, 2018
  1. Add do not exists code back to offsetalignment

    martin-steinegger committed Oct 22, 2018
  2. Set threads to 1 if mmseqs was not compiled with OMP

    martin-steinegger committed Oct 22, 2018
  3. update blastn workflow

    martin-steinegger committed Oct 22, 2018