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Update MMseqs2

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Martin Steinegger
Martin Steinegger committed Oct 31, 2018
1 parent a67b0ab commit 005a5c53a8c2c8da3aa1b716f886d15dbb5caf72
Showing with 3 additions and 3 deletions.
  1. +1 −1 lib/mmseqs
  2. +2 −2 src/assembler/filternoncoding.cpp
Submodule mmseqs updated 172 files
@@ -41,8 +41,8 @@ int filternoncoding(int argc, const char **argv, const Command& command) {
model.LoadModel(std::string((const char *)predict_coding_acc9743_57x32x64_model, predict_coding_acc9743_57x32x64_model_len));

SubstitutionMatrix subMat(par.scoringMatrixFile.c_str(), 2.0, 0.0);
ReducedMatrix redMat7(subMat.probMatrix, subMat.subMatrixPseudoCounts, 7, subMat.getBitFactor());
// ReducedMatrix redMat3(subMat.probMatrix, subMat.subMatrixPseudoCounts, 3, subMat.getBitFactor());
ReducedMatrix redMat7(subMat.probMatrix, subMat.subMatrixPseudoCounts, subMat.aa2int, subMat.int2aa, subMat.alphabetSize, 7, subMat.getBitFactor());
// ReducedMatrix redMat3(subMat.probMatrix, subMat.subMatrixPseudoCounts, subMat.aa2int, subMat.int2aa, subMat.alphabetSize, 3, subMat.getBitFactor());

// Create a 1D Tensor on length 20 for input data.
#pragma omp parallel

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