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Fix issues with --min-length #10

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martin-steinegger committed May 11, 2019
1 parent 53a2eff commit 4e2fac86ebde84bf000425eb4e2f5a5b63269c14
Showing with 1 addition and 1 deletion.
  1. +1 −1 src/workflow/Assembler.cpp
@@ -137,7 +137,7 @@ int assembler(int argc, const char **argv, const Command &command) {
par.contigEndMode = 0;
par.orfStartMode = 0;
par.orfMaxLength = par.orfMinLength;
par.orfMinLength = 20;
par.orfMinLength = std::min(par.orfMinLength, 20);
par.orfMaxGaps = 0;
cmd.addVariable("EXTRACTORFS_START_PAR", par.createParameterString(par.extractorfs).c_str());

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