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Fix merging issues

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martin-steinegger committed Apr 30, 2019
1 parent 4133120 commit 53a2eff54d26d24ec3c9486020ebf15add15af9f
Showing with 9 additions and 3 deletions.
  1. +1 −1 data/assembler.sh
  2. +1 −1 src/assembler/assembleresult.cpp
  3. +1 −1 src/assembler/filternoncoding.cpp
  4. +6 −0 src/plass.cpp
@@ -7,7 +7,7 @@ fail() {

deleteIncremental() {
if [ -n "$REMOVE_INCREMENTAL_TMP" ] && [ ! -z "$1" ]; then
rm "$1"*
"$MMSEQS" rmdb "$1"
fi
}

@@ -273,7 +273,7 @@ int doassembly(LocalParameters &par) {

// cleanup

resultWriter.close(sequenceDbr->getDbtype());
resultWriter.close(true);
alnReader->close();
delete [] wasExtended;
delete alnReader;
@@ -173,7 +173,7 @@ int filternoncoding(int argc, const char **argv, const Command& command) {
// delete[] pentaAACnt;
}
// std::cout << "Filtered: " << static_cast<float>(cnt)/ static_cast<float>(seqDb.getSize()) << std::endl;
dbw.close();
dbw.close(true);
seqDb.close();

return EXIT_SUCCESS;
@@ -61,6 +61,12 @@ std::vector<struct Command> commands = {
"Milot Mirdita <milot@mirdita.de>",
"<i:sequenceDB> <o:sequenceDB>",
CITATION_MMSEQS2},
{"rmdb", rmdb, &par.onlyverbosity, COMMAND_DB,
"Removes the database",
NULL,
"Martin Steinegger <martin.steinegger@mpibpc.mpg.de>",
"<i:DB>",
CITATION_MMSEQS2, {{"DB", DbType::ACCESS_MODE_INPUT, &DbValidator::allDb }}},
{"swapresults", swapresults, &par.swapresult, COMMAND_HIDDEN,
"Reformat prefilter/alignment/cluster DB as if target DB had been searched through query DB",
NULL,

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